SMTL ID : 1rhc.1

F420-dependent secondary alcohol dehydrogenase in complex with an F420-acetone adduct

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: Y.14, R.15, D.18 Ligand excluded by PLIP CL.2: 7 residues within 4Å: Chain A: F.8, S.10, Q.13, W.229, W.246, G.308, N.309 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: Y.14, R.15, D.18 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain B: F.8, S.10, Q.13, W.229, W.246, G.308, N.309 Ligand excluded by PLIP

2 x K: POTASSIUM ION(Non-covalent)

K.3: 4 residues within 4Å: Chain A: R.93, P.97, G.98, D.166 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.166, H2O.27 K.8: 4 residues within 4Å: Chain B: R.93, P.97, G.98, D.166 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.166, H2O.173

2 x F42: COENZYME F420(Non-covalent)

F42.4: 26 residues within 4Å: Chain A: D.37, D.38, H.39, C.72, I.73, C.75, G.105, A.106, G.107, E.108, N.111, Q.126, S.173, G.174, M.175, G.176, P.177, K.178, G.179, M.191, T.192, V.193, L.227, F.255, K.256 Ligands: ACN.5 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:I.73, A:V.193, A:V.193, A:L.227 Hydrogen bonds: A:D.38, A:D.38, A:I.73, A:A.106, A:G.107, A:G.107, A:N.111, A:Q.126, A:Q.126, A:S.173, A:M.175, A:G.176, A:K.178, A:G.179, A:T.192, A:K.256 Water bridges: A:C.75, A:R.79, A:E.108 Salt bridges: A:K.256 F42.9: 26 residues within 4Å: Chain B: D.37, D.38, H.39, C.72, I.73, C.75, G.105, A.106, G.107, E.108, N.111, Q.126, S.173, G.174, M.175, G.176, P.177, K.178, G.179, M.191, T.192, V.193, L.227, F.255, K.256 Ligands: ACN.10 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:I.73, B:V.193, B:V.193, B:L.227 Hydrogen bonds: B:D.38, B:D.38, B:I.73, B:A.106, B:G.107, B:G.107, B:N.111, B:Q.126, B:Q.126, B:S.173, B:M.175, B:G.176, B:K.178, B:G.179, B:T.192, B:K.256 Water bridges: B:C.75, B:R.79, B:E.108 Salt bridges: B:K.256

2 x ACN: ACETONE(Non-covalent)

ACN.5: 6 residues within 4Å: Chain A: E.12, H.39, W.43, E.108, W.229 Ligands: F42.4 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.229 ACN.10: 6 residues within 4Å: Chain B: E.12, H.39, W.43, E.108, W.229 Ligands: F42.9 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aufhammer, S.W. et al., Coenzyme binding in f(420)-dependent secondary alcohol dehydrogenase, a member of the bacterial luciferase family. Structure (2004)

Release Date

2004-03-30

Peptides

F420-dependent alcohol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

F420-dependent alcohol dehydrogenase