SMTL ID : 1rjm.1

Crystal Structure of MenB (Rv0548c) from Mycobacterium tuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-hexamer

Ligands

2 x EP1: 3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID(Non-covalent)

EP1.1: 18 residues within 4Å: Chain A: A.226, R.227, Q.228, V.229, G.230 Chain B: A.226, R.227, Q.228, V.229, F.233, Q.251, M.252 Chain C: A.226, R.227, Q.228, V.229, G.230, M.252 10 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A, 3 interactions with chain C Hydrogen bonds: B:Q.251 Water bridges: B:R.227, B:Q.231, A:R.227, A:R.227, C:R.227, C:R.227 Salt bridges: B:R.227, A:R.227, C:R.227 EP1.2: 18 residues within 4Å: Chain D: A.226, R.227, Q.228, V.229, G.230 Chain E: A.226, R.227, Q.228, V.229, F.233, Q.251, M.252 Chain F: A.226, R.227, Q.228, V.229, G.230, M.252 10 PLIP interactions: 4 interactions with chain E, 3 interactions with chain D, 3 interactions with chain F Hydrogen bonds: E:Q.251 Water bridges: E:R.227, E:Q.231, D:R.227, D:R.227, F:R.227, F:R.227 Salt bridges: E:R.227, D:R.227, F:R.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnston, J.M. et al., Structure of naphthoate synthase (MenB) from Mycobacterium tuberculosis in both native and product-bound forms. Acta Crystallogr.,Sect.D (2005)

Release Date

2004-11-30

Peptides

MenB: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

MenB

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