SMTL ID : 1rjw.1

CRYSTAL STRUCTURE OF NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS STRAIN LLD-R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.92, G.93, C.95, C.98, C.106 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.92, A:C.95, A:C.98, A:C.106 ZN.2: 5 residues within 4Å: Chain A: C.38, T.40, H.61, C.148 Ligands: ETF.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:C.38, A:H.61, A:C.148, ETF.3 ZN.5: 5 residues within 4Å: Chain B: C.92, G.93, C.95, C.98, C.106 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.92, B:C.95, B:C.98, B:C.106 ZN.6: 5 residues within 4Å: Chain B: C.38, T.40, H.61, C.148 Ligands: ETF.7 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:C.38, B:H.61, B:C.148, ETF.7 ZN.11: 5 residues within 4Å: Chain C: C.92, G.93, C.95, C.98, C.106 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.92, C:C.95, C:C.98, C:C.106 ZN.12: 4 residues within 4Å: Chain C: C.38, H.61, C.148 Ligands: ETF.13 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Ligand interactions Metal complexes: C:C.38, C:H.61, C:C.148, ETF.13 ZN.16: 5 residues within 4Å: Chain D: C.92, G.93, C.95, C.98, C.106 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.92, D:C.95, D:C.98, D:C.106 ZN.17: 5 residues within 4Å: Chain D: C.38, T.40, H.61, C.148 Ligands: ETF.18 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Ligand interactions Metal complexes: D:C.38, D:H.61, D:C.148, ETF.18

13 x ETF: TRIFLUOROETHANOL(Non-covalent)

ETF.3: 9 residues within 4Å: Chain A: C.38, T.40, H.61, W.87, C.148, L.262, I.285, V.286 Ligands: ZN.2 No protein-ligand interaction detected (PLIP) ETF.4: 6 residues within 4Å: Chain A: Y.171, G.172, V.194, D.195, I.196, A.243 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.195, A:I.196 Halogen bonds: A:V.194 ETF.7: 9 residues within 4Å: Chain B: C.38, T.40, H.61, W.87, C.148, L.262, I.285, V.286 Ligands: ZN.6 No protein-ligand interaction detected (PLIP) ETF.8: 8 residues within 4Å: Chain B: Y.171, G.172, V.194, D.195, I.196, P.215, A.243 Ligands: ETF.10 No protein-ligand interaction detected (PLIP) ETF.9: 6 residues within 4Å: Chain B: V.18, K.54, P.56, L.57, I.58, D.117 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.54, B:I.58, B:D.117 ETF.10: 5 residues within 4Å: Chain B: I.196, P.215, P.242, A.243 Ligands: ETF.8 No protein-ligand interaction detected (PLIP) ETF.13: 9 residues within 4Å: Chain C: C.38, T.40, W.49, H.61, W.87, C.148, L.262, I.285 Ligands: ZN.12 No protein-ligand interaction detected (PLIP) ETF.14: 8 residues within 4Å: Chain C: Y.171, G.172, V.194, D.195, I.196, P.215, A.243 Ligands: ETF.15 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.195, C:I.196 ETF.15: 7 residues within 4Å: Chain C: Y.171, I.196, P.215, P.242, A.243, S.246 Ligands: ETF.14 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.246, C:S.246 ETF.18: 9 residues within 4Å: Chain D: C.38, T.40, H.61, W.87, C.148, L.262, I.285, V.286 Ligands: ZN.17 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:T.40 ETF.19: 6 residues within 4Å: Chain D: P.215, E.218, D.219, A.220, A.221, S.246 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.218, D:A.220 ETF.20: 7 residues within 4Å: Chain D: Y.171, G.172, V.194, D.195, I.196, P.215, A.243 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:I.196 ETF.21: 5 residues within 4Å: Chain D: H.43, W.49, L.262, P.263, P.264 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ceccarelli, C. et al., Crystal Structure and Amide H/D Exchange of Binary Complexes of Alcohol Dehydrogenase from Bacillus stearothermophilus: Insight into Thermostability and Cofactor Binding. Biochemistry (2004)

Release Date

2004-05-11

Peptides

Alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Alcohol dehydrogenase