SMTL ID : 1rk8.1

Structure of the cytosolic protein PYM bound to the Mago-Y14 core of the exon junction complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: E.138 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.138, H2O.1, H2O.1 CA.2: 4 residues within 4Å: Chain A: D.87, E.88, E.91 Ligands: CA.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.87, A:E.91, H2O.1, H2O.1, H2O.1 CA.3: 3 residues within 4Å: Chain A: D.87, E.88 Ligands: CA.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.87, A:E.88, H2O.1, H2O.1, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bono, F. et al., Molecular insights into the interaction of PYM with the Mago-Y14 core of the exon junction complex. EMBO Rep. (2004)

Release Date

2004-04-13

Peptides

CG8781-PA protein: A
Mago nashi protein: B
Within the bgcn gene intron protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

CG8781-PA protein

Mago nashi protein

Within the bgcn gene intron protein

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