SMTL ID : 1rkt.1

Crystal structure of yfiR, a putative transcriptional regulator from Bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

39 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 9 residues within 4Å: Chain B: Q.110, F.111 Ligands: UNX.2, UNX.3, UNX.8, UNX.9, UNX.12, UNX.14, UNX.32 Ligand excluded by PLIP UNX.2: 4 residues within 4Å: Chain B: I.172 Ligands: UNX.1, UNX.8, UNX.9 Ligand excluded by PLIP UNX.3: 7 residues within 4Å: Chain B: L.114 Ligands: UNX.1, UNX.8, UNX.9, UNX.12, UNX.14, UNX.36 Ligand excluded by PLIP UNX.4: 5 residues within 4Å: Chain B: I.64, G.67, L.68 Ligands: UNX.13, UNX.14 Ligand excluded by PLIP UNX.5: 6 residues within 4Å: Chain B: R.130, L.165 Ligands: UNX.6, UNX.10, UNX.11, UNX.36 Ligand excluded by PLIP UNX.6: 6 residues within 4Å: Chain B: D.169 Ligands: UNX.5, UNX.7, UNX.10, UNX.11, UNX.36 Ligand excluded by PLIP UNX.7: 7 residues within 4Å: Chain B: I.64, L.127, R.130 Ligands: UNX.6, UNX.10, UNX.11, UNX.36 Ligand excluded by PLIP UNX.8: 7 residues within 4Å: Chain B: F.111 Ligands: UNX.1, UNX.2, UNX.3, UNX.9, UNX.12, UNX.14 Ligand excluded by PLIP UNX.9: 6 residues within 4Å: Chain B: F.111 Ligands: UNX.1, UNX.2, UNX.3, UNX.8, UNX.12 Ligand excluded by PLIP UNX.10: 5 residues within 4Å: Ligands: UNX.5, UNX.6, UNX.7, UNX.11, UNX.36 Ligand excluded by PLIP UNX.11: 6 residues within 4Å: Chain B: L.127 Ligands: UNX.5, UNX.6, UNX.7, UNX.10, UNX.36 Ligand excluded by PLIP UNX.12: 8 residues within 4Å: Chain B: Q.110, F.111, L.114 Ligands: UNX.1, UNX.3, UNX.8, UNX.9, UNX.14 Ligand excluded by PLIP UNX.13: 6 residues within 4Å: Chain B: I.63, I.64, G.67, Q.110 Ligands: UNX.4, UNX.32 Ligand excluded by PLIP UNX.14: 7 residues within 4Å: Chain B: I.64, Q.110 Ligands: UNX.1, UNX.3, UNX.4, UNX.8, UNX.12 Ligand excluded by PLIP UNX.15: 3 residues within 4Å: Ligands: UNX.16, UNX.17, UNX.18 Ligand excluded by PLIP UNX.16: 4 residues within 4Å: Chain A: L.165 Ligands: UNX.15, UNX.17, UNX.18 Ligand excluded by PLIP UNX.17: 3 residues within 4Å: Chain A: L.127 Ligands: UNX.15, UNX.16 Ligand excluded by PLIP UNX.18: 5 residues within 4Å: Chain A: D.169 Ligands: UNX.15, UNX.16, UNX.19, UNX.20 Ligand excluded by PLIP UNX.19: 5 residues within 4Å: Chain A: L.114 Ligands: UNX.18, UNX.20, UNX.21, UNX.25 Ligand excluded by PLIP UNX.20: 4 residues within 4Å: Ligands: UNX.18, UNX.19, UNX.21, UNX.25 Ligand excluded by PLIP UNX.21: 4 residues within 4Å: Chain A: Q.110 Ligands: UNX.19, UNX.20, UNX.25 Ligand excluded by PLIP UNX.22: 7 residues within 4Å: Chain A: D.169, Q.173 Chain B: Q.173 Ligands: UNX.23, UNX.24, UNX.33, UNX.35 Ligand excluded by PLIP UNX.23: 3 residues within 4Å: Ligands: UNX.22, UNX.24, UNX.35 Ligand excluded by PLIP UNX.24: 4 residues within 4Å: Chain B: Q.173 Ligands: UNX.22, UNX.23, UNX.35 Ligand excluded by PLIP UNX.25: 5 residues within 4Å: Chain A: I.64, Q.110 Ligands: UNX.19, UNX.20, UNX.21 Ligand excluded by PLIP UNX.26: 4 residues within 4Å: Chain B: G.67, E.70, G.71 Ligands: UNX.29 Ligand excluded by PLIP UNX.27: 4 residues within 4Å: Chain A: E.65, L.68, R.130 Ligands: UNX.31 Ligand excluded by PLIP UNX.28: 1 residues within 4Å: Ligands: UNX.30 Ligand excluded by PLIP UNX.29: 3 residues within 4Å: Chain B: G.67, E.70 Ligands: UNX.26 Ligand excluded by PLIP UNX.30: 2 residues within 4Å: Chain A: Y.91 Ligands: UNX.28 Ligand excluded by PLIP UNX.31: 5 residues within 4Å: Chain A: L.68, R.130, L.133, F.134 Ligands: UNX.27 Ligand excluded by PLIP UNX.32: 4 residues within 4Å: Chain B: A.107, Q.110 Ligands: UNX.1, UNX.13 Ligand excluded by PLIP UNX.33: 4 residues within 4Å: Chain A: D.169, Q.173 Chain B: Q.173 Ligands: UNX.22 Ligand excluded by PLIP UNX.34: 2 residues within 4Å: Chain A: F.111, Q.173 Ligand excluded by PLIP UNX.35: 3 residues within 4Å: Ligands: UNX.22, UNX.23, UNX.24 Ligand excluded by PLIP UNX.36: 8 residues within 4Å: Chain B: I.64, L.68 Ligands: UNX.3, UNX.5, UNX.6, UNX.7, UNX.10, UNX.11 Ligand excluded by PLIP UNX.37: 3 residues within 4Å: Chain B: L.68 Ligands: UNX.38, UNX.39 Ligand excluded by PLIP UNX.38: 3 residues within 4Å: Chain B: G.71 Ligands: UNX.37, UNX.39 Ligand excluded by PLIP UNX.39: 3 residues within 4Å: Chain B: Y.91 Ligands: UNX.37, UNX.38 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajan, S.S. et al., Crystal structure of YfiR, an unusual TetR/CamR-type putative transcriptional regulator from Bacillus subtilis. Proteins (2006)

Release Date

2004-04-13

Peptides

protein yfiR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

protein yfiR