SMTL ID : 1rkx.1

Crystal Structure at 1.8 Angstrom of CDP-D-glucose 4,6-dehydratase from Yersinia pseudotuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 28 residues within 4Å: Chain A: G.16, T.18, G.19, F.20, K.21, S.40, L.41, T.42, P.44, G.64, D.65, I.66, R.67, M.87, A.88, A.89, P.91, T.106, I.130, T.131, S.132, D.133, Y.157, K.161, A.193, G.194, N.195, V.196 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.16, A:T.18, A:T.18, A:F.20, A:K.21, A:K.21, A:S.40, A:L.41, A:T.42, A:D.65, A:I.66, A:R.67, A:M.87, A:A.89, A:K.161, A:V.196 Water bridges: A:G.19, A:G.22, A:T.106, A:T.106, A:N.195 NAD.2: 28 residues within 4Å: Chain B: G.16, T.18, G.19, F.20, K.21, S.40, L.41, P.44, G.64, D.65, I.66, R.67, M.87, A.88, A.89, P.91, T.106, I.130, T.131, S.132, D.133, Y.157, K.161, A.193, G.194, N.195, V.196, R.206 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:G.16, B:T.18, B:F.20, B:K.21, B:K.21, B:S.40, B:L.41, B:T.42, B:D.65, B:I.66, B:R.67, B:M.87, B:A.89, B:Y.157, B:K.161, B:N.195, B:V.196, B:R.206 Water bridges: B:G.19, B:G.22, B:Y.242 NAD.3: 27 residues within 4Å: Chain C: G.16, T.18, G.19, F.20, K.21, S.40, L.41, P.44, G.64, D.65, I.66, R.67, M.87, A.88, A.89, P.91, T.106, I.130, T.131, S.132, D.133, Y.157, K.161, A.193, G.194, N.195, V.196 22 PLIP interactions: 22 interactions with chain C Hydrogen bonds: C:G.16, C:T.18, C:T.18, C:F.20, C:K.21, C:K.21, C:S.40, C:L.41, C:T.42, C:D.65, C:I.66, C:R.67, C:M.87, C:A.89, C:K.161, C:N.195, C:V.196, C:R.206 Water bridges: C:G.19, C:G.22, C:R.206, C:R.206 NAD.4: 29 residues within 4Å: Chain D: G.16, T.18, G.19, F.20, K.21, S.40, L.41, T.42, P.44, G.64, D.65, I.66, R.67, M.87, A.88, A.89, P.91, T.106, I.130, T.131, S.132, D.133, Y.157, K.161, A.193, G.194, N.195, V.196, R.206 21 PLIP interactions: 21 interactions with chain D Hydrogen bonds: D:G.16, D:T.18, D:F.20, D:K.21, D:K.21, D:S.40, D:L.41, D:T.42, D:D.65, D:I.66, D:R.67, D:M.87, D:A.89, D:Y.157, D:K.161, D:N.195, D:V.196 Water bridges: D:G.19, D:G.22 Salt bridges: D:R.206, D:R.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vogan, E.M. et al., Crystal Structure at 1.8 A Resolution of CDP-d-Glucose 4,6-Dehydratase from Yersinia pseudotuberculosis. Biochemistry (2004)

Release Date

2004-03-30

Peptides

CDP-glucose-4,6-dehydratase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

CDP-glucose-4,6-dehydratase