SMTL ID : 1rl4.1 (1 other biounit)

Plasmodium falciparum peptide deformylase complex with inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

1 x CO: COBALT (II) ION(Non-covalent)

CO.1: 5 residues within 4Å: Chain A: Q.56, C.100, H.142, H.146 Ligands: BRR.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.100, A:H.142, A:H.146

1 x BRR: (2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID(Non-covalent)

BRR.2: 13 residues within 4Å: Chain A: G.49, I.50, G.51, Q.56, E.98, G.99, C.100, L.101, H.142, E.143, H.146 Ligands: CO.1, BL5.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.50, A:E.98, A:H.142 Hydrogen bonds: A:I.50, A:G.51, A:Q.56, A:L.101

1 x BL5: 2-{N'-[2-(5-AMINO-1-PHENYLCARBAMOYL-PENTYLCARBAMOYL)-HEXYL]-HYDRAZINOMETHYL}-HEXANOIC ACID(5-AMINO-1-PHENYLCARBAMOYL-PENTYL)-AMIDE(Non-covalent)

BL5.3: 6 residues within 4Å: Chain A: L.96, I.97, G.134, I.135, R.138 Ligands: BRR.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.97, A:I.135, A:R.138 Hydrogen bonds: A:I.97, A:I.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robien, M.A. et al., An improved crystal form of Plasmodium falciparum peptide deformylase. Protein Sci. (2004)

Release Date

2003-12-09

Peptides

formylmethionine deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

formylmethionine deformylase

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