SMTL ID : 1rlc.1

CRYSTAL STRUCTURE OF THE UNACTIVATED RIBULOSE 1, 5-BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE COMPLEXED WITH A TRANSITION STATE ANALOG, 2-CARBOXY-D-ARABINITOL 1,5-BISPHOSPHATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-8-8-mer

Ligands

8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)

CAP.1: 15 residues within 4Å: Chain A: K.175, K.177, K.201, E.204, H.294, R.295, H.298, H.327, S.379, G.380, G.381, F.402, G.403, G.404 Chain M: N.123 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain M Hydrogen bonds: A:K.175, A:K.177, A:K.177, A:S.379, A:S.379, A:G.380, A:G.381, A:G.403, A:G.404, M:N.123 Salt bridges: A:K.175, A:K.201, A:H.294, A:H.294, A:R.295, A:H.298, A:H.327, A:H.327 CAP.2: 15 residues within 4Å: Chain C: K.175, K.177, K.201, E.204, H.294, R.295, H.298, H.327, S.379, G.380, G.381, F.402, G.403, G.404 Chain O: N.123 18 PLIP interactions: 17 interactions with chain C, 1 interactions with chain O Hydrogen bonds: C:K.175, C:K.177, C:K.177, C:S.379, C:S.379, C:G.380, C:G.381, C:G.403, C:G.404, O:N.123 Salt bridges: C:K.175, C:K.201, C:H.294, C:H.294, C:R.295, C:H.298, C:H.327, C:H.327 CAP.3: 15 residues within 4Å: Chain E: K.175, K.177, K.201, E.204, H.294, R.295, H.298, H.327, S.379, G.380, G.381, F.402, G.403, G.404 Chain I: N.123 18 PLIP interactions: 1 interactions with chain I, 17 interactions with chain E Hydrogen bonds: I:N.123, E:K.175, E:K.177, E:K.177, E:S.379, E:S.379, E:G.380, E:G.381, E:G.403, E:G.404 Salt bridges: E:K.175, E:K.201, E:H.294, E:H.294, E:R.295, E:H.298, E:H.327, E:H.327 CAP.4: 15 residues within 4Å: Chain G: K.175, K.177, K.201, E.204, H.294, R.295, H.298, H.327, S.379, G.380, G.381, F.402, G.403, G.404 Chain K: N.123 18 PLIP interactions: 17 interactions with chain G, 1 interactions with chain K Hydrogen bonds: G:K.175, G:K.177, G:K.177, G:S.379, G:S.379, G:G.380, G:G.381, G:G.403, G:G.404, K:N.123 Salt bridges: G:K.175, G:K.201, G:H.294, G:H.294, G:R.295, G:H.298, G:H.327, G:H.327 CAP.5: 15 residues within 4Å: Chain E: N.123 Chain I: K.175, K.177, K.201, E.204, H.294, R.295, H.298, H.327, S.379, G.380, G.381, F.402, G.403, G.404 18 PLIP interactions: 17 interactions with chain I, 1 interactions with chain E Hydrogen bonds: I:K.175, I:K.177, I:K.177, I:S.379, I:S.379, I:G.380, I:G.381, I:G.403, I:G.404, E:N.123 Salt bridges: I:K.175, I:K.201, I:H.294, I:H.294, I:R.295, I:H.298, I:H.327, I:H.327 CAP.6: 15 residues within 4Å: Chain G: N.123 Chain K: K.175, K.177, K.201, E.204, H.294, R.295, H.298, H.327, S.379, G.380, G.381, F.402, G.403, G.404 18 PLIP interactions: 17 interactions with chain K, 1 interactions with chain G Hydrogen bonds: K:K.175, K:K.177, K:K.177, K:S.379, K:S.379, K:G.380, K:G.381, K:G.403, K:G.404, G:N.123 Salt bridges: K:K.175, K:K.201, K:H.294, K:H.294, K:R.295, K:H.298, K:H.327, K:H.327 CAP.7: 15 residues within 4Å: Chain A: N.123 Chain M: K.175, K.177, K.201, E.204, H.294, R.295, H.298, H.327, S.379, G.380, G.381, F.402, G.403, G.404 18 PLIP interactions: 17 interactions with chain M, 1 interactions with chain A Hydrogen bonds: M:K.175, M:K.177, M:K.177, M:S.379, M:S.379, M:G.380, M:G.381, M:G.403, M:G.404, A:N.123 Salt bridges: M:K.175, M:K.201, M:H.294, M:H.294, M:R.295, M:H.298, M:H.327, M:H.327 CAP.8: 15 residues within 4Å: Chain C: N.123 Chain O: K.175, K.177, K.201, E.204, H.294, R.295, H.298, H.327, S.379, G.380, G.381, F.402, G.403, G.404 18 PLIP interactions: 17 interactions with chain O, 1 interactions with chain C Hydrogen bonds: O:K.175, O:K.177, O:K.177, O:S.379, O:S.379, O:G.380, O:G.381, O:G.403, O:G.404, C:N.123 Salt bridges: O:K.175, O:K.201, O:H.294, O:H.294, O:R.295, O:H.298, O:H.327, O:H.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, K.Y. et al., Crystal structure of the unactivated ribulose 1,5-bisphosphate carboxylase/oxygenase complexed with a transition state analog, 2-carboxy-D-arabinitol 1,5-bisphosphate. Protein Sci. (1994)

Release Date

1993-10-31

Peptides

RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN): ACEGIKMO
RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN): BDFHJLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

C
L

E
L

G
L

I
L

K
L

M
L

O
L

B
S

D
S

F
S

H
S

J
S

L
S

N
S

P
S

RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN)

RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN)

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