SMTL ID : 1rli.1

The Structure of Trp Repressor Binding Protein from Bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

11 x PT: PLATINUM (II) ION(Non-covalent)(Non-functional Binders)

PT.1: 1 residues within 4Å: Chain A: M.86 No protein-ligand interaction detected (PLIP) PT.2: 2 residues within 4Å: Chain A: K.5, H.73 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.73, H2O.4, H2O.4 PT.3: 2 residues within 4Å: Chain A: N.18, T.19 No protein-ligand interaction detected (PLIP) PT.4: 2 residues within 4Å: Chain B: M.86, Q.138 No protein-ligand interaction detected (PLIP) PT.5: 2 residues within 4Å: Chain B: H.73 Ligands: PO4.8 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.73, H2O.10 PT.9: 1 residues within 4Å: Chain C: K.39 No protein-ligand interaction detected (PLIP) PT.10: 1 residues within 4Å: Chain C: N.18 No protein-ligand interaction detected (PLIP) PT.11: 2 residues within 4Å: Chain C: K.5, H.73 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.73, H2O.14, H2O.14 PT.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PT.13: 2 residues within 4Å: Chain D: K.5, H.73 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.73, H2O.20 PT.14: 1 residues within 4Å: Chain D: N.18 No protein-ligand interaction detected (PLIP)

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 5 residues within 4Å: Chain B: G.17, N.18, T.19, P.80 Ligands: PO4.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.18, B:T.19 Water bridges: B:N.18, B:V.123 PO4.7: 8 residues within 4Å: Chain B: N.10, G.12, T.13, R.14, G.17, T.19, D.20 Ligands: PO4.6 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.10, B:N.10, B:N.10, B:G.12, B:T.13, B:G.17, B:D.20 Water bridges: B:T.19 PO4.8: 4 residues within 4Å: Chain B: K.5, I.6, I.74 Ligands: PT.5 3 PLIP interactions: 3 interactions with chain B Water bridges: B:K.5, B:K.5 Salt bridges: B:K.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal structure analysis of trp repressor binding protein from Bacillus subtilis. To be Published

Release Date

2004-04-13

Peptides

Trp Repressor Binding Protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Trp Repressor Binding Protein