SMTL ID : 1rm8.1

Crystal structure of the catalytic domain of MMP-16/MT3-MMP: Characterization of MT-MMP specific features

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.123, H.127, H.133 Ligands: BAT.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.123, A:H.127, A:H.133 ZN.2: 4 residues within 4Å: Chain A: H.70, D.72, H.85, H.98 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.70, A:D.72, A:H.85, A:H.98

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.77, G.78, G.80, F.82, D.100, E.103 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.77, A:G.78, A:G.80, A:F.82, A:D.100, A:E.103 CA.4: 5 residues within 4Å: Chain A: D.60, G.92, I.93, G.94, D.96 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.60, A:G.92, A:G.94, A:D.96, H2O.3

1 x BAT: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE(Non-covalent)

BAT.5: 15 residues within 4Å: Chain A: G.81, F.82, L.83, A.84, H.85, V.120, H.123, E.124, H.127, H.133, A.142, P.143, F.144, Y.145 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.120, A:F.144 Hydrogen bonds: A:G.81, A:L.83, A:A.84, A:P.143, A:Y.145 pi-Cation interactions: A:H.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lang, R. et al., Crystal structure of the catalytic domain of MMP-16/MT3-MMP: characterization of MT-MMP specific features. J.Mol.Biol. (2004)

Release Date

2004-03-09

Peptides

Matrix metalloproteinase-16: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Matrix metalloproteinase-16