SMTL ID : 1rmd.1

RAG1 DIMERIZATION DOMAIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.2, H.6, C.29, H.31 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.2, A:H.6, A:C.29, A:H.31 ZN.2: 6 residues within 4Å: Chain A: H.6, C.26, C.29, C.46, C.49 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.26, A:C.29, A:C.46, A:C.49 ZN.3: 4 residues within 4Å: Chain A: C.41, H.43, C.61, C.64 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.41, A:H.43, A:C.61, A:C.64 ZN.4: 5 residues within 4Å: Chain A: C.91, A.93, C.96, H.108, H.112 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.91, A:C.96, A:H.108, A:H.112 ZN.5: 5 residues within 4Å: Chain B: C.2, H.6, C.29, H.31 Ligands: ZN.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.2, B:H.6, B:C.29, B:H.31 ZN.6: 6 residues within 4Å: Chain B: H.6, C.26, C.29, C.46, C.49 Ligands: ZN.5 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.26, B:C.29, B:C.46, B:C.49 ZN.7: 4 residues within 4Å: Chain B: C.41, H.43, C.61, C.64 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.41, B:H.43, B:C.61, B:C.64 ZN.8: 5 residues within 4Å: Chain B: C.91, A.93, C.96, H.108, H.112 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.91, B:C.96, B:H.108, B:H.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bellon, S.F. et al., Crystal structure of the RAG1 dimerization domain reveals multiple zinc-binding motifs including a novel zinc binuclear cluster. Nat.Struct.Biol. (1997)

Release Date

1997-07-23

Peptides

RAG1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

RAG1