SMTL ID : 1rmg.1

RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- BMA: alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-BMA.1: 7 residues within 4Å: Chain A: N.32, N.59, Y.83, T.85, F.115, Y.117 Ligands: MAN.14 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.115 Hydrogen bonds: A:Y.117, A:Y.117

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 4 residues within 4Å: Chain A: Q.1, N.263, V.264, N.299 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.1

14 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.3: 3 residues within 4Å: Chain A: D.324, S.368 Ligands: BMA.4 No protein-ligand interaction detected (PLIP) MAN.5: 4 residues within 4Å: Chain A: T.385, T.386 Ligands: MAN.13, MAN.18 No protein-ligand interaction detected (PLIP) MAN.6: 1 residues within 4Å: Chain A: T.398 No protein-ligand interaction detected (PLIP) MAN.7: 6 residues within 4Å: Chain A: S.409, Y.411, P.412, G.413, L.414 Ligands: MAN.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.413, A:L.414 MAN.8: 5 residues within 4Å: Chain A: E.162, Y.164, W.187, Y.417, S.418 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.162 MAN.9: 3 residues within 4Å: Chain A: T.372, T.374 Ligands: BMA.12 No protein-ligand interaction detected (PLIP) MAN.11: 5 residues within 4Å: Chain A: Y.358, C.359, S.373, T.374 Ligands: MAN.17 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.374 MAN.13: 4 residues within 4Å: Chain A: S.383, A.384, T.385 Ligands: MAN.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.385 MAN.14: 6 residues within 4Å: Chain A: F.115, S.400, I.401, P.402 Ligands: NAG-NAG-BMA-MAN-BMA.1, NAG-NAG-BMA-MAN-BMA.1 No protein-ligand interaction detected (PLIP) MAN.15: 2 residues within 4Å: Chain A: T.408 Ligands: MAN.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.408 MAN.17: 3 residues within 4Å: Chain A: T.371, T.372 Ligands: MAN.11 No protein-ligand interaction detected (PLIP) MAN.18: 4 residues within 4Å: Chain A: T.386, M.387, A.388 Ligands: MAN.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.387 MAN.19: 5 residues within 4Å: Chain A: Y.354, K.361, T.367, S.368, Y.369 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.361, A:K.361, A:S.368 MAN.20: 1 residues within 4Å: Chain A: S.380 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.380

3 x BMA: beta-D-mannopyranose(Post Translational Modification)

BMA.4: 7 residues within 4Å: Chain A: D.324, R.351, S.368, Y.369, T.370 Ligands: MAN.3, BMA.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.368 BMA.12: 5 residues within 4Å: Chain A: L.347, T.370, T.372 Ligands: BMA.4, MAN.9 No protein-ligand interaction detected (PLIP) BMA.16: 1 residues within 4Å: Chain A: T.376 No protein-ligand interaction detected (PLIP)

1 x GLC: alpha-D-glucopyranose(Post Translational Modification)

GLC.10: 3 residues within 4Å: Chain A: T.405, I.406, P.407 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.405 Water bridges: A:T.405, A:T.405

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petersen, T.N. et al., The crystal structure of rhamnogalacturonase A from Aspergillus aculeatus: a right-handed parallel beta helix. Structure (1997)

Release Date

1998-03-04

Peptides

RHAMNOGALACTURONASE A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RHAMNOGALACTURONASE A