SMTL ID : 1rnl.2 (2 other biounits)

THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL FROM NARL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

24 x PT: PLATINUM (II) ION(Non-covalent)

PT.1: 3 residues within 4Å: Chain A: M.27 Ligands: PT.2, PT.3 Ligand excluded by PLIP PT.2: 3 residues within 4Å: Chain A: M.27 Ligands: PT.1, PT.3 Ligand excluded by PLIP PT.3: 3 residues within 4Å: Chain A: M.27 Ligands: PT.1, PT.2 Ligand excluded by PLIP PT.4: 4 residues within 4Å: Chain A: E.126, M.174 Ligands: PT.5, PT.6 Ligand excluded by PLIP PT.5: 3 residues within 4Å: Chain A: M.174 Ligands: PT.4, PT.6 Ligand excluded by PLIP PT.6: 3 residues within 4Å: Chain A: M.174 Ligands: PT.4, PT.5 Ligand excluded by PLIP PT.10: 3 residues within 4Å: Chain B: M.27 Ligands: PT.11, PT.12 Ligand excluded by PLIP PT.11: 3 residues within 4Å: Chain B: M.27 Ligands: PT.10, PT.12 Ligand excluded by PLIP PT.12: 3 residues within 4Å: Chain B: M.27 Ligands: PT.10, PT.11 Ligand excluded by PLIP PT.13: 4 residues within 4Å: Chain B: E.126, M.174 Ligands: PT.14, PT.15 Ligand excluded by PLIP PT.14: 3 residues within 4Å: Chain B: M.174 Ligands: PT.13, PT.15 Ligand excluded by PLIP PT.15: 3 residues within 4Å: Chain B: M.174 Ligands: PT.13, PT.14 Ligand excluded by PLIP PT.19: 3 residues within 4Å: Chain C: M.27 Ligands: PT.20, PT.21 Ligand excluded by PLIP PT.20: 3 residues within 4Å: Chain C: M.27 Ligands: PT.19, PT.21 Ligand excluded by PLIP PT.21: 3 residues within 4Å: Chain C: M.27 Ligands: PT.19, PT.20 Ligand excluded by PLIP PT.22: 4 residues within 4Å: Chain C: E.126, M.174 Ligands: PT.23, PT.24 Ligand excluded by PLIP PT.23: 3 residues within 4Å: Chain C: M.174 Ligands: PT.22, PT.24 Ligand excluded by PLIP PT.24: 3 residues within 4Å: Chain C: M.174 Ligands: PT.22, PT.23 Ligand excluded by PLIP PT.28: 3 residues within 4Å: Chain D: M.27 Ligands: PT.29, PT.30 Ligand excluded by PLIP PT.29: 3 residues within 4Å: Chain D: M.27 Ligands: PT.28, PT.30 Ligand excluded by PLIP PT.30: 3 residues within 4Å: Chain D: M.27 Ligands: PT.28, PT.29 Ligand excluded by PLIP PT.31: 4 residues within 4Å: Chain D: E.126, M.174 Ligands: PT.32, PT.33 Ligand excluded by PLIP PT.32: 3 residues within 4Å: Chain D: M.174 Ligands: PT.31, PT.33 Ligand excluded by PLIP PT.33: 3 residues within 4Å: Chain D: M.174 Ligands: PT.31, PT.32 Ligand excluded by PLIP

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain A: V.87 Chain C: L.59, N.60, M.64, V.87 Ligands: GOL.25 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:L.59 Water bridges: C:M.61 GOL.8: 4 residues within 4Å: Chain A: K.22, V.33, E.36 Ligands: GOL.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.22 GOL.9: 7 residues within 4Å: Chain A: K.22, I.25, S.26, I.31, T.32, V.33 Ligands: GOL.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.22, A:V.33 Water bridges: A:S.26 GOL.16: 6 residues within 4Å: Chain B: V.87 Chain D: L.59, N.60, M.64, V.87 Ligands: GOL.34 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:L.59 Water bridges: D:M.61 GOL.17: 4 residues within 4Å: Chain B: K.22, V.33, E.36 Ligands: GOL.18 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.22 GOL.18: 7 residues within 4Å: Chain B: K.22, I.25, S.26, I.31, T.32, V.33 Ligands: GOL.17 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.22, B:V.33 Water bridges: B:S.26 GOL.25: 6 residues within 4Å: Chain A: L.59, N.60, M.64, V.87 Chain C: V.87 Ligands: GOL.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.59 Water bridges: A:M.61 GOL.26: 4 residues within 4Å: Chain C: K.22, V.33, E.36 Ligands: GOL.27 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.22, C:E.36 GOL.27: 7 residues within 4Å: Chain C: K.22, I.25, S.26, I.31, T.32, V.33 Ligands: GOL.26 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.22, C:T.32, C:V.33 Water bridges: C:S.26 GOL.34: 6 residues within 4Å: Chain B: L.59, N.60, M.64, V.87 Chain D: V.87 Ligands: GOL.16 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.59 Water bridges: B:M.61 GOL.35: 4 residues within 4Å: Chain D: K.22, V.33, E.36 Ligands: GOL.36 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.22, D:E.36 GOL.36: 7 residues within 4Å: Chain D: K.22, I.25, S.26, I.31, T.32, V.33 Ligands: GOL.35 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.22, D:T.32, D:V.33 Water bridges: D:S.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baikalov, I. et al., Structure of the Escherichia coli response regulator NarL. Biochemistry (1996)

Release Date

1996-11-08

Peptides

NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL

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