SMTL ID : 1ros.1 (1 other biounit)

Crystal structure of MMP-12 complexed to 2-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)ethyl-4-(4-ethoxy[1,1-biphenyl]-4-yl)-4-oxobutanoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.113, H.117, H.123 Ligands: DEO.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.113, A:H.117, A:H.123 ZN.2: 4 residues within 4Å: Chain A: H.63, D.65, H.78, H.91 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.63, A:D.65, A:H.78, A:H.91

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.70, G.71, G.73, I.75, D.93, E.96 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.70, A:G.71, A:G.73, A:I.75, A:D.93, A:E.96 CA.4: 5 residues within 4Å: Chain A: D.53, G.85, I.86, G.87, D.89 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.53, A:G.85, A:G.87, A:D.89 CA.5: 4 residues within 4Å: Chain A: T.17, D.19, E.94, E.96 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.19, A:E.94, A:E.94, A:E.96, H2O.4

1 x DEO: 2-[2-(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2-YL)ETHYL]-4-(4'-ETHOXY-1,1'-BIPHENYL-4-YL)-4-OXOBUTANOIC ACID(Non-covalent)

DEO.6: 19 residues within 4Å: Chain A: I.75, L.76, A.77, H.78, A.79, L.109, H.113, E.114, H.117, H.123, V.130, F.132, P.133, T.134, Y.135, K.136, V.138, F.143 Ligands: ZN.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:H.113, A:H.117, A:Y.135, A:V.138, A:F.143 Hydrogen bonds: A:L.76, A:A.77, A:A.79 Salt bridges: A:H.113, A:H.117, A:H.123 pi-Stacking: A:H.113, A:H.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morales, R. et al., Crystal structures of novel non-peptidic, non-zinc chelating inhibitors bound to MMP-12. J.Mol.Biol. (2004)

Release Date

2004-12-07

Peptides

Macrophage metalloelastase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage metalloelastase

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