SMTL ID : 1roz.1

Deoxyhypusine synthase holoenzyme in its low ionic strength, high pH crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain A: T.104, S.105, N.106, L.107, S.109, T.131, A.132, G.133, E.136, D.238, G.282, G.283, I.306, N.307, T.308, A.309, A.341, D.342, A.343 Chain D: G.284, V.285, H.288, D.313, S.315, D.316, S.317 Ligands: NAD.4 24 PLIP interactions: 15 interactions with chain A, 9 interactions with chain D Hydrogen bonds: A:S.105, A:S.105, A:N.106, A:N.106, A:S.109, A:S.109, A:A.132, A:G.133, A:D.238, A:G.283, A:T.308, A:T.308, A:A.343, D:G.284, D:D.316, D:S.317, D:S.317, D:S.317, D:S.317 Water bridges: A:N.106, A:N.106, D:V.285, D:S.315, D:D.316 NAD.2: 29 residues within 4Å: Chain B: T.104, S.105, N.106, L.107, S.109, T.131, A.132, G.133, E.136, E.137, D.238, G.239, G.282, G.283, I.306, N.307, T.308, A.309, A.341, D.342, A.343 Chain C: G.284, V.285, H.288, D.313, S.315, D.316, S.317 Ligands: NAD.3 28 PLIP interactions: 18 interactions with chain B, 10 interactions with chain C Hydrogen bonds: B:T.104, B:S.105, B:S.105, B:S.105, B:N.106, B:S.109, B:T.131, B:A.132, B:G.133, B:G.283, B:T.308, B:T.308, B:D.342, B:D.342, B:A.343, C:G.284, C:D.316, C:D.316, C:S.317, C:S.317, C:S.317, C:S.317 Water bridges: B:N.106, B:N.106, B:G.283, C:V.285, C:S.315, C:S.315 NAD.3: 27 residues within 4Å: Chain B: G.284, V.285, H.288, D.313, S.315, D.316, S.317 Chain C: T.104, S.105, N.106, L.107, S.109, T.131, A.132, G.133, E.136, D.238, G.282, G.283, I.306, N.307, T.308, A.309, A.341, D.342, A.343 Ligands: NAD.2 24 PLIP interactions: 7 interactions with chain B, 17 interactions with chain C Hydrogen bonds: B:G.284, B:D.316, B:S.317, B:S.317, B:S.317, B:S.317, C:T.104, C:S.105, C:S.105, C:N.106, C:N.106, C:S.109, C:S.109, C:T.131, C:A.132, C:G.133, C:G.283, C:T.308, C:D.342, C:A.343 Water bridges: B:V.285, C:N.106, C:N.106, C:T.308 NAD.4: 29 residues within 4Å: Chain A: G.284, V.285, H.288, D.313, S.315, D.316, S.317 Chain D: T.104, S.105, N.106, L.107, S.109, T.131, A.132, G.133, E.136, E.137, D.238, G.239, G.282, G.283, I.306, N.307, T.308, A.309, A.341, D.342, A.343 Ligands: NAD.1 24 PLIP interactions: 16 interactions with chain D, 8 interactions with chain A Hydrogen bonds: D:S.105, D:S.105, D:S.105, D:N.106, D:S.109, D:A.132, D:G.133, D:D.238, D:G.283, D:T.308, D:D.342, D:A.343, A:G.284, A:D.316, A:S.317, A:S.317, A:S.317, A:S.317 Water bridges: D:N.106, D:N.106, D:G.283, D:T.308, A:V.285, A:S.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Umland, T.C. et al., A New Crystal Structure of Deoxyhypusine Synthase Reveals the Configuration of the Active Enzyme and of an Enzyme-NAD-Inhibitor Ternary Complex. J.Biol.Chem. (2004)

Release Date

2004-07-13

Peptides

Deoxyhypusine synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Deoxyhypusine synthase

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