- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 8 x AHZ: ADENOSINE DIPHOSPHATE 5-(BETA-ETHYL)-4-METHYL-THIAZOLE-2-CARBOXYLIC ACID(Non-covalent)
AHZ.2: 31 residues within 4Å:- Chain A: V.45, G.46, A.47, G.48, S.49, A.50, I.69, E.70, Q.71, G.77, G.78, V.141, A.142, A.143, S.186, C.187, G.188, H.189, D.190, F.193, T.196, G.240, M.241, R.251, M.252, G.253, M.259
- Chain D: C.172, D.174, P.175
- Ligands: ZN.1
30 PLIP interactions:28 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: A:A.50, A:Q.71, A:Q.71, A:G.77, A:G.78, A:A.143, A:G.188, A:T.196, A:T.196, A:M.241, A:M.252, A:G.253
- Water bridges: A:G.48, A:G.48, A:S.49, A:S.49, A:E.70, A:E.70, A:S.72, A:G.77, A:S.186, A:H.189, A:D.190, A:E.242, A:R.251, A:R.251, D:D.174, D:D.174
- Salt bridges: A:H.189, A:R.251
AHZ.5: 29 residues within 4Å:- Chain B: V.45, G.46, G.48, S.49, A.50, I.69, E.70, Q.71, G.77, G.78, V.141, A.142, A.143, S.186, C.187, G.188, H.189, D.190, F.193, T.196, G.240, M.241, R.251, M.252, G.253, M.259
- Chain G: C.172, D.174
- Ligands: ZN.4
27 PLIP interactions:27 interactions with chain B- Hydrogen bonds: B:A.50, B:Q.71, B:G.77, B:G.78, B:A.143, B:G.188, B:T.196, B:T.196, B:M.241, B:M.252, B:G.253
- Water bridges: B:G.48, B:S.49, B:S.49, B:G.51, B:E.70, B:E.70, B:E.70, B:Q.71, B:S.186, B:H.189, B:D.190, B:D.190, B:E.242, B:R.251
- Salt bridges: B:H.189, B:R.251
AHZ.7: 31 residues within 4Å:- Chain B: C.172, D.174, P.175
- Chain C: V.45, G.46, A.47, G.48, S.49, A.50, I.69, E.70, Q.71, G.77, G.78, V.141, A.142, A.143, S.186, C.187, G.188, H.189, D.190, F.193, T.196, G.240, M.241, R.251, M.252, G.253, M.259
- Ligands: ZN.6
28 PLIP interactions:28 interactions with chain C- Hydrogen bonds: C:A.50, C:Q.71, C:Q.71, C:G.77, C:G.78, C:A.143, C:G.188, C:T.196, C:T.196, C:M.241, C:M.252, C:G.253
- Water bridges: C:G.48, C:G.48, C:S.49, C:S.49, C:E.70, C:E.70, C:S.72, C:G.77, C:S.186, C:H.189, C:D.190, C:E.242, C:R.251, C:R.251
- Salt bridges: C:H.189, C:R.251
AHZ.10: 29 residues within 4Å:- Chain D: V.45, G.46, G.48, S.49, A.50, I.69, E.70, Q.71, G.77, G.78, V.141, A.142, A.143, S.186, C.187, G.188, H.189, D.190, F.193, T.196, G.240, M.241, R.251, M.252, G.253, M.259
- Chain E: C.172, D.174
- Ligands: ZN.9
29 PLIP interactions:27 interactions with chain D, 2 interactions with chain E- Hydrogen bonds: D:A.50, D:Q.71, D:G.77, D:G.78, D:A.143, D:G.188, D:T.196, D:T.196, D:M.241, D:M.252, D:G.253
- Water bridges: D:G.48, D:S.49, D:S.49, D:G.51, D:E.70, D:E.70, D:E.70, D:Q.71, D:S.186, D:H.189, D:D.190, D:D.190, D:E.242, D:R.251, E:D.174, E:D.174
- Salt bridges: D:H.189, D:R.251
AHZ.12: 31 residues within 4Å:- Chain E: V.45, G.46, A.47, G.48, S.49, A.50, I.69, E.70, Q.71, G.77, G.78, V.141, A.142, A.143, S.186, C.187, G.188, H.189, D.190, F.193, T.196, G.240, M.241, R.251, M.252, G.253, M.259
- Chain H: C.172, D.174, P.175
- Ligands: ZN.11
28 PLIP interactions:28 interactions with chain E- Hydrogen bonds: E:A.50, E:Q.71, E:Q.71, E:G.77, E:G.78, E:A.143, E:G.188, E:T.196, E:T.196, E:M.241, E:M.252, E:G.253
- Water bridges: E:G.48, E:G.48, E:S.49, E:S.49, E:E.70, E:E.70, E:S.72, E:G.77, E:S.186, E:H.189, E:D.190, E:E.242, E:R.251, E:R.251
- Salt bridges: E:H.189, E:R.251
AHZ.15: 29 residues within 4Å:- Chain C: C.172, D.174
- Chain F: V.45, G.46, G.48, S.49, A.50, I.69, E.70, Q.71, G.77, G.78, V.141, A.142, A.143, S.186, C.187, G.188, H.189, D.190, F.193, T.196, G.240, M.241, R.251, M.252, G.253, M.259
- Ligands: ZN.14
29 PLIP interactions:27 interactions with chain F, 2 interactions with chain C- Hydrogen bonds: F:A.50, F:Q.71, F:G.77, F:G.78, F:A.143, F:G.188, F:T.196, F:T.196, F:M.241, F:M.252, F:G.253
- Water bridges: F:G.48, F:S.49, F:S.49, F:G.51, F:E.70, F:E.70, F:E.70, F:Q.71, F:S.186, F:H.189, F:D.190, F:D.190, F:E.242, F:R.251, C:D.174, C:D.174
- Salt bridges: F:H.189, F:R.251
AHZ.17: 31 residues within 4Å:- Chain F: C.172, D.174, P.175
- Chain G: V.45, G.46, A.47, G.48, S.49, A.50, I.69, E.70, Q.71, G.77, G.78, V.141, A.142, A.143, S.186, C.187, G.188, H.189, D.190, F.193, T.196, G.240, M.241, R.251, M.252, G.253, M.259
- Ligands: ZN.16
30 PLIP interactions:28 interactions with chain G, 2 interactions with chain F- Hydrogen bonds: G:A.50, G:Q.71, G:Q.71, G:G.77, G:G.78, G:A.143, G:G.188, G:T.196, G:T.196, G:M.241, G:M.252, G:G.253
- Water bridges: G:G.48, G:G.48, G:S.49, G:S.49, G:E.70, G:E.70, G:S.72, G:G.77, G:S.186, G:H.189, G:D.190, G:E.242, G:R.251, G:R.251, F:D.174, F:D.174
- Salt bridges: G:H.189, G:R.251
AHZ.20: 29 residues within 4Å:- Chain A: C.172, D.174
- Chain H: V.45, G.46, G.48, S.49, A.50, I.69, E.70, Q.71, G.77, G.78, V.141, A.142, A.143, S.186, C.187, G.188, H.189, D.190, F.193, T.196, G.240, M.241, R.251, M.252, G.253, M.259
- Ligands: ZN.19
27 PLIP interactions:27 interactions with chain H- Hydrogen bonds: H:A.50, H:Q.71, H:G.77, H:G.78, H:A.143, H:G.188, H:T.196, H:T.196, H:M.241, H:M.252, H:G.253
- Water bridges: H:G.48, H:S.49, H:S.49, H:G.51, H:E.70, H:E.70, H:E.70, H:Q.71, H:S.186, H:H.189, H:D.190, H:D.190, H:E.242, H:R.251
- Salt bridges: H:H.189, H:R.251
- 4 x HTO: HEPTANE-1,2,3-TRIOL(Non-covalent)
HTO.3: 4 residues within 4Å:- Chain A: D.110, T.111
- Chain C: P.16, I.17
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:D.110, A:T.111, C:P.16
HTO.8: 4 residues within 4Å:- Chain A: P.16, I.17
- Chain C: D.110, T.111
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:D.110, C:T.111, A:P.16
HTO.13: 4 residues within 4Å:- Chain E: D.110, T.111
- Chain G: P.16, I.17
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain G- Hydrophobic interactions: E:D.110, E:T.111, G:P.16
HTO.18: 4 residues within 4Å:- Chain E: P.16, I.17
- Chain G: D.110, T.111
3 PLIP interactions:1 interactions with chain E, 2 interactions with chain G- Hydrophobic interactions: E:P.16, G:D.110, G:T.111
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Godoi, P.H. et al., Structure of the thiazole biosynthetic enzyme THI1 from Arabidopsis thaliana. J.Biol.Chem. (2006)
- Release Date
- 2005-02-22
- Peptides
- Thiazole biosynthetic enzyme: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 8 x AHZ: ADENOSINE DIPHOSPHATE 5-(BETA-ETHYL)-4-METHYL-THIAZOLE-2-CARBOXYLIC ACID(Non-covalent)
- 4 x HTO: HEPTANE-1,2,3-TRIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Godoi, P.H. et al., Structure of the thiazole biosynthetic enzyme THI1 from Arabidopsis thaliana. J.Biol.Chem. (2006)
- Release Date
- 2005-02-22
- Peptides
- Thiazole biosynthetic enzyme: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B