SMTL ID : 1rsc.1

STRUCTURE OF AN EFFECTOR INDUCED INACTIVATED STATE OF RIBULOSE BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE: THE BINARY COMPLEX BETWEEN ENZYME AND XYLULOSE BISPHOSPHATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-8-8-mer

Ligands

8 x XBP: XYLULOSE-1,5-BISPHOSPHATE(Non-covalent)

XBP.1: 19 residues within 4Å: Chain A: K.172, K.174, D.200, E.201, H.291, R.292, H.324, K.331, L.332, S.376, G.377, G.378, F.399, G.400, G.401 Chain C: E.57, T.62, W.63, N.120 22 PLIP interactions: 20 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:K.172, A:K.174, A:D.200, A:K.331, A:S.376, A:S.376, A:G.378, A:G.400, A:G.401, C:T.62, C:T.62 Water bridges: A:T.170, A:T.170, A:H.291, A:G.326, A:S.376, A:G.377, A:I.379 Salt bridges: A:K.172, A:R.292, A:H.324, A:K.331 XBP.2: 19 residues within 4Å: Chain A: E.57, T.62, W.63, N.120 Chain C: K.172, K.174, D.200, E.201, H.291, R.292, H.324, K.331, L.332, S.376, G.377, G.378, F.399, G.400, G.401 17 PLIP interactions: 15 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:K.172, C:K.174, C:D.200, C:H.324, C:K.331, C:S.376, C:S.376, C:G.378, C:G.400, C:G.401, A:T.62, A:T.62 Water bridges: C:G.402 Salt bridges: C:K.172, C:R.292, C:H.324, C:K.331 XBP.3: 19 residues within 4Å: Chain E: K.172, K.174, D.200, E.201, H.291, R.292, H.324, K.331, L.332, S.376, G.377, G.378, F.399, G.400, G.401 Chain G: E.57, T.62, W.63, N.120 15 PLIP interactions: 13 interactions with chain E, 2 interactions with chain G Hydrogen bonds: E:K.172, E:K.174, E:D.200, E:K.331, E:S.376, E:S.376, E:G.378, E:G.400, E:G.401, G:T.62, G:T.62 Salt bridges: E:K.172, E:R.292, E:H.324, E:K.331 XBP.4: 19 residues within 4Å: Chain E: E.57, T.62, W.63, N.120 Chain G: K.172, K.174, D.200, E.201, H.291, R.292, H.324, K.331, L.332, S.376, G.377, G.378, F.399, G.400, G.401 16 PLIP interactions: 14 interactions with chain G, 2 interactions with chain E Hydrogen bonds: G:K.172, G:K.174, G:D.200, G:H.324, G:K.331, G:S.376, G:S.376, G:G.378, G:G.400, G:G.401, E:T.62, E:T.62 Salt bridges: G:K.172, G:R.292, G:H.324, G:K.331 XBP.5: 19 residues within 4Å: Chain I: K.172, K.174, D.200, E.201, H.291, R.292, H.324, K.331, L.332, S.376, G.377, G.378, F.399, G.400, G.401 Chain K: E.57, T.62, W.63, N.120 16 PLIP interactions: 13 interactions with chain I, 3 interactions with chain K Hydrogen bonds: I:K.172, I:K.174, I:D.200, I:K.331, I:S.376, I:S.376, I:G.378, I:G.400, I:G.401, K:T.62, K:T.62, K:N.120 Salt bridges: I:K.172, I:R.292, I:H.324, I:K.331 XBP.6: 19 residues within 4Å: Chain I: E.57, T.62, W.63, N.120 Chain K: K.172, K.174, D.200, E.201, H.291, R.292, H.324, K.331, L.332, S.376, G.377, G.378, F.399, G.400, G.401 17 PLIP interactions: 14 interactions with chain K, 3 interactions with chain I Hydrogen bonds: K:K.172, K:K.174, K:D.200, K:H.324, K:K.331, K:S.376, K:S.376, K:G.378, K:G.400, K:G.401, I:T.62, I:T.62, I:N.120 Salt bridges: K:K.172, K:R.292, K:H.324, K:K.331 XBP.7: 19 residues within 4Å: Chain M: K.172, K.174, D.200, E.201, H.291, R.292, H.324, K.331, L.332, S.376, G.377, G.378, F.399, G.400, G.401 Chain O: E.57, T.62, W.63, N.120 15 PLIP interactions: 13 interactions with chain M, 2 interactions with chain O Hydrogen bonds: M:K.172, M:K.174, M:D.200, M:K.331, M:S.376, M:S.376, M:G.378, M:G.400, M:G.401, O:T.62, O:T.62 Salt bridges: M:K.172, M:R.292, M:H.324, M:K.331 XBP.8: 19 residues within 4Å: Chain M: E.57, T.62, W.63, N.120 Chain O: K.172, K.174, D.200, E.201, H.291, R.292, H.324, K.331, L.332, S.376, G.377, G.378, F.399, G.400, G.401 16 PLIP interactions: 14 interactions with chain O, 2 interactions with chain M Hydrogen bonds: O:K.172, O:K.174, O:D.200, O:H.324, O:K.331, O:S.376, O:S.376, O:G.378, O:G.400, O:G.401, M:T.62, M:T.62 Salt bridges: O:K.172, O:R.292, O:H.324, O:K.331

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newman, J. et al., Structure of an effector-induced inactivated state of ribulose 1,5-bisphosphate carboxylase/oxygenase: the binary complex between enzyme and xylulose 1,5-bisphosphate. Structure (1994)

Release Date

1995-05-08

Peptides

RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN): ACEGIKMO
RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN): BDFHJLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
C

G
D

I
E

K
F

M
G

O
H

B
M

D
I

F
N

H
J

J
O

L
K

N
P

P
L

RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN)

RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN)

Related Entries With Identical Sequence