SMTL ID : 1rsi.1

DHNA complex with 2-Amino-5-bromo-3-hydroxy-6-phenylpyrimidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-octamer

Ligands

8 x 977: 2-AMINO-5-BROMO-6-PHENYLPYRIMIDIN-4-OL(Non-covalent)

977.1: 11 residues within 4Å: Chain A: A.18, N.71, L.72, L.73, E.74, K.100 Chain D: V.48, T.51, V.52, H.53, Y.54 8 PLIP interactions: 5 interactions with chain D, 3 interactions with chain A Hydrophobic interactions: D:V.48, D:Y.54, A:A.18 Hydrogen bonds: D:T.51, D:T.51, A:L.73 pi-Stacking: D:Y.54 Salt bridges: A:E.74 977.2: 11 residues within 4Å: Chain B: A.18, N.71, L.72, L.73, E.74, K.100 Chain C: V.48, T.51, V.52, H.53, Y.54 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:V.48, C:Y.54, B:A.18 Hydrogen bonds: C:T.51, C:V.52, B:L.73 pi-Stacking: C:Y.54 Salt bridges: B:E.74 977.3: 11 residues within 4Å: Chain A: V.48, T.51, V.52, H.53, Y.54 Chain C: A.18, N.71, L.72, L.73, E.74, K.100 8 PLIP interactions: 3 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:A.18, A:V.48, A:Y.54 Hydrogen bonds: C:L.73, A:T.51, A:V.52 Salt bridges: C:E.74 pi-Stacking: A:Y.54 977.4: 11 residues within 4Å: Chain B: V.48, T.51, V.52, H.53, Y.54 Chain D: A.18, N.71, L.72, L.73, E.74, K.100 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:V.48, B:Y.54, D:A.18 Hydrogen bonds: B:T.51, B:V.52, D:L.73 pi-Stacking: B:Y.54 Salt bridges: D:E.74 977.5: 11 residues within 4Å: Chain E: A.18, N.71, L.72, L.73, E.74, K.100 Chain H: V.48, T.51, V.52, H.53, Y.54 8 PLIP interactions: 5 interactions with chain H, 3 interactions with chain E Hydrophobic interactions: H:V.48, H:Y.54, E:A.18 Hydrogen bonds: H:V.52, H:Y.54, E:L.73 pi-Stacking: H:Y.54 Salt bridges: E:E.74 977.6: 11 residues within 4Å: Chain F: A.18, N.71, L.72, L.73, E.74, K.100 Chain G: V.48, T.51, V.52, H.53, Y.54 8 PLIP interactions: 5 interactions with chain G, 3 interactions with chain F Hydrophobic interactions: G:V.48, G:Y.54, F:A.18 Hydrogen bonds: G:T.51, G:Y.54, F:L.73 pi-Stacking: G:Y.54 Salt bridges: F:E.74 977.7: 11 residues within 4Å: Chain E: V.48, T.51, V.52, H.53, Y.54 Chain G: A.18, N.71, L.72, L.73, E.74, K.100 8 PLIP interactions: 3 interactions with chain G, 5 interactions with chain E Hydrophobic interactions: G:A.18, E:V.48, E:Y.54 Hydrogen bonds: G:L.73, E:V.52, E:Y.54 Salt bridges: G:E.74 pi-Stacking: E:Y.54 977.8: 11 residues within 4Å: Chain F: V.48, T.51, V.52, H.53, Y.54 Chain H: A.18, N.71, L.72, L.73, E.74, K.100 8 PLIP interactions: 3 interactions with chain H, 5 interactions with chain F Hydrophobic interactions: H:A.18, F:V.48, F:Y.54 Hydrogen bonds: H:L.73, F:V.52, F:Y.54 Salt bridges: H:E.74 pi-Stacking: F:Y.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sanders, W.J. et al., Discovery of Potent Inhibitors of Dihydroneopterin Aldolase Using CrystaLEAD High-Throughput X-ray Crystallographic Screening and Structure-Directed Lead Optimization. J.Med.Chem. (2004)

Release Date

2004-03-30

Peptides

Dihydroneopterin aldolase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

Dihydroneopterin aldolase

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