SMTL ID : 1ruy.1

1930 Swine H1 Hemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-3-3-mer

Ligands

5 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)(Non-functional Binders)

NDG.1: 8 residues within 4Å: Chain A: N.68, P.69, E.70, N.91, C.94, P.141, R.225 Ligands: NAG.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.69, A:E.70 Hydrogen bonds: A:N.68, A:R.225, A:R.225 Water bridges: A:P.141 Salt bridges: A:R.225 NDG.4: 8 residues within 4Å: Chain C: N.68, P.69, E.70, N.91, C.94, P.141, R.225 Ligands: NDG.5 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:N.68, C:E.70, C:E.70, C:N.91, C:N.91, C:R.225, C:R.225 NDG.5: 1 residues within 4Å: Ligands: NDG.4 No protein-ligand interaction detected (PLIP) NDG.7: 8 residues within 4Å: Chain E: N.68, P.69, E.70, N.91, C.94, P.141, R.225 Ligands: NAG.8 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:E.70 Hydrogen bonds: E:N.68, E:R.225, E:R.225 Water bridges: E:E.70, E:P.141 Salt bridges: E:R.225 NDG.9: 2 residues within 4Å: Chain E: N.280, N.291 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:N.291, E:N.291, E:N.291

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.2: 2 residues within 4Å: Chain A: R.225 Ligands: NDG.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.225 Salt bridges: A:R.225 NAG.3: 2 residues within 4Å: Chain A: N.280, N.291 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.291, A:N.291, A:N.291 NAG.6: 2 residues within 4Å: Chain C: N.280, N.291 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.291, C:N.291 NAG.8: 2 residues within 4Å: Chain E: R.225 Ligands: NDG.7 1 PLIP interactions: 1 interactions with chain E Salt bridges: E:R.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gamblin, S.J. et al., The structure and receptor binding properties of the 1918 influenza hemagglutinin. Science (2004)

Release Date

2004-03-30

Peptides

hemagglutinin: ACE
hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

C
J

E
L

B
I

D
K

F
M

hemagglutinin

hemagglutinin