SMTL ID : 1ruz.1

1918 H1 Hemagglutinin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-3-3-mer

Ligands

9 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)(Non-functional Binders)

NDG.1: 8 residues within 4Å: Chain A: N.68, P.69, E.70, E.90, N.91, C.94, R.225 Ligands: NAG.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.69, A:E.70 Hydrogen bonds: A:N.68, A:E.70, A:R.225, A:R.225 NDG.4: 1 residues within 4Å: Chain A: N.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.15 NDG.5: 1 residues within 4Å: Chain A: N.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.27 NDG.6: 6 residues within 4Å: Chain C: N.68, E.70, N.91, C.94, R.225 Ligands: NDG.7 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:E.70 Hydrogen bonds: C:N.68, C:E.70, C:N.91, C:R.225, C:R.225 NDG.7: 1 residues within 4Å: Ligands: NDG.6 No protein-ligand interaction detected (PLIP) NDG.8: 3 residues within 4Å: Chain D: E.150, N.154, T.156 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.150, D:N.154, D:N.154 NDG.9: 7 residues within 4Å: Chain E: N.68, P.69, E.70, E.90, N.91, C.94, R.225 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:P.69, E:E.70 Hydrogen bonds: E:N.68, E:E.70, E:E.70, E:R.225, E:R.225 NDG.10: 1 residues within 4Å: Chain E: N.27 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.27 NDG.11: 2 residues within 4Å: Chain F: N.154, T.156 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:N.154, F:N.154, F:T.156

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.2: 2 residues within 4Å: Chain A: R.225 Ligands: NDG.1 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.225 NAG.3: 2 residues within 4Å: Chain A: N.280, N.291 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.291 Hydrogen bonds: A:N.291, A:N.291, A:N.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gamblin, S.J. et al., The structure and receptor binding properties of the 1918 influenza hemagglutinin. Science (2004)

Release Date

2004-03-30

Peptides

hemagglutinin: ACE
hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

C
J

E
L

B
I

D
K

F
M

hemagglutinin

hemagglutinin