- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x PLG: N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE](Covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 10 residues within 4Å:- Chain A: Y.72, Q.74, Y.82
- Chain B: S.52, H.147, S.202, H.230, K.256, R.401
- Ligands: PLP.3
9 PLIP interactions:1 interactions with chain A, 8 interactions with chain B- Hydrogen bonds: A:Q.74, B:S.52, B:S.52, B:S.202, B:S.202
- Salt bridges: B:H.147, B:H.230, B:K.256, B:R.401
PO4.5: 10 residues within 4Å:- Chain C: Y.72, Q.74, Y.82
- Chain D: S.52, H.147, S.202, H.230, K.256, R.401
- Ligands: PLP.6
10 PLIP interactions:8 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:S.52, D:S.52, D:S.202, D:S.202, C:Q.74, C:Y.82
- Salt bridges: D:H.147, D:H.230, D:K.256, D:R.401
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.3: 18 residues within 4Å:- Chain A: Y.72, Y.117, G.301, G.302
- Chain B: S.118, G.119, S.120, N.123, H.147, T.149, H.150, D.227, A.229, H.230, T.253, H.255, K.256
- Ligands: PO4.2
17 PLIP interactions:13 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:D.227, B:A.229, B:K.256
- Hydrogen bonds: B:S.118, B:G.119, B:S.120, B:S.120, B:N.123, B:T.149, B:T.201, B:H.230, A:Y.72, A:Y.72, A:G.301, A:G.302
- Salt bridges: B:H.255
- pi-Stacking: B:H.147
PLP.6: 18 residues within 4Å:- Chain C: Y.72, Y.117, G.301, G.302
- Chain D: S.118, G.119, S.120, N.123, H.147, T.149, H.150, D.227, A.229, H.230, T.253, H.255, K.256
- Ligands: PO4.5
16 PLIP interactions:12 interactions with chain D, 4 interactions with chain C- Hydrophobic interactions: D:D.227, D:A.229, D:K.256
- Hydrogen bonds: D:S.118, D:G.119, D:S.120, D:S.120, D:N.123, D:T.201, D:K.256, C:Y.72, C:Y.117, C:G.301, C:G.302
- Salt bridges: D:H.255
- pi-Stacking: D:H.147
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Szebenyi, D.M. et al., Serine Hydroxymethyltransferase: Role of Glu75 and Evidence that Serine Is Cleaved by a Retroaldol Mechanism. Biochemistry (2004)
- Release Date
- 2004-06-15
- Peptides
- Serine hydroxymethyltransferase, cytosolic: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x PLG: N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE](Covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Szebenyi, D.M. et al., Serine Hydroxymethyltransferase: Role of Glu75 and Evidence that Serine Is Cleaved by a Retroaldol Mechanism. Biochemistry (2004)
- Release Date
- 2004-06-15
- Peptides
- Serine hydroxymethyltransferase, cytosolic: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B