SMTL ID : 1rwa.1

Crystal structure of Arthrobacter aurescens chondroitin AC lyase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

3 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 2 residues within 4Å: Chain A: Y.406, C.408 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.408, H2O.8 HG.2: 3 residues within 4Å: Chain A: R.152, C.156, G.198 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.156, H2O.22, H2O.26 HG.3: 3 residues within 4Å: Chain A: L.66, C.114, W.128 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.114, H2O.32

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: S.241, Y.242, V.245, S.297, R.300, N.303, L.308 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.300, A:R.300, A:N.303 Water bridges: A:S.241, A:S.297 GOL.5: 6 residues within 4Å: Chain A: L.480, G.481, E.482, T.665, S.690, H.692 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.482, A:S.690, A:H.692 GOL.6: 3 residues within 4Å: Chain A: D.274, E.277, G.278 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.274, A:D.274, A:E.277 Water bridges: A:E.277 GOL.7: 8 residues within 4Å: Chain A: D.430, Q.433, R.533, N.534, H.536, N.540, G.569, F.570 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.533, A:N.540, A:N.540, A:G.569 Water bridges: A:D.430

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lunin, V.V. et al., High-resolution crystal structure of Arthrobacter aurescens chondroitin AC lyase: an enzyme-substrate complex defines the catalytic mechanism. J.Mol.Biol. (2004)

Release Date

2004-04-13

Peptides

chondroitin AC lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

chondroitin AC lyase

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