SMTL ID : 1rwj.1

c7-type three-heme cytochrome domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

3 x HEC: HEME C(Covalent)

HEC.1: 23 residues within 4Å: Chain A: G.2, M.3, T.4, P.5, P.6, V.9, F.11, F.21, H.23, H.26, L.27, Y.30, K.31, C.32, C.35, H.36, F.40, Y.42, K.43, A.44, G.45, K.47 Ligands: HEC.2 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:P.6, A:V.9, A:F.21, A:F.21, A:H.26, A:L.27, A:Y.30, A:F.40, A:F.40, A:F.40, A:Y.42, A:Y.42 Hydrogen bonds: A:A.44, A:G.45, A:K.47 Water bridges: A:A.46, A:K.47 Metal complexes: A:H.23, A:H.36 HEC.2: 20 residues within 4Å: Chain A: F.11, A.20, F.21, F.25, H.26, M.29, Y.30, C.35, L.39, F.40, C.60, C.63, H.64, D.68, A.69, F.70, K.78, C.79 Ligands: HEC.1, HEC.3 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:F.11, A:F.21, A:F.21, A:F.25, A:F.25, A:Y.30, A:L.39, A:F.40, A:F.40, A:A.69 Hydrogen bonds: A:F.70 Water bridges: A:K.78 pi-Stacking: A:F.21, A:F.70 Metal complexes: A:H.26, A:H.64 HEC.3: 22 residues within 4Å: Chain A: F.11, M.13, V.16, A.19, K.47, R.48, F.49, T.50, M.51, M.54, C.60, H.64, F.70, S.71, S.72, A.73, S.74, D.75, C.76, C.79, H.80 Ligands: HEC.2 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:F.11, A:F.11, A:V.16, A:A.19, A:H.64, A:F.70 Hydrogen bonds: A:F.49, A:M.51 Water bridges: A:R.48, A:F.49, A:A.52 Salt bridges: A:R.48 Metal complexes: A:H.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pokkuluri, P.R. et al., Structure of a novel c7-type three-heme cytochrome domain from a multidomain cytochrome c polymer. Protein Sci. (2004)

Release Date

2004-08-03

Peptides

Cytochrome c family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome c family protein