SMTL ID : 1ry2.1

Crystal structure of yeast acetyl-coenzyme A synthetase in complex with AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

3 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 15 residues within 4Å: Chain A: W.315, I.316, S.391, G.393, E.394, P.395, D.417, T.418, Y.419, W.420, Q.421, T.422, D.509, I.521, R.524 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.393, A:T.418, A:W.420, A:Q.421, A:T.422, A:T.422, A:T.422, A:D.509, A:R.524 pi-Stacking: A:Y.419, A:Y.419 AMP.2: 15 residues within 4Å: Chain B: W.315, I.316, S.391, G.393, E.394, P.395, D.417, T.418, Y.419, W.420, Q.421, T.422, D.509, I.521, R.524 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.393, B:T.418, B:W.420, B:Q.421, B:T.422, B:T.422, B:T.422, B:D.509, B:R.524 pi-Stacking: B:Y.419, B:Y.419 AMP.3: 15 residues within 4Å: Chain C: W.315, I.316, S.391, G.393, E.394, P.395, D.417, T.418, Y.419, W.420, Q.421, T.422, D.509, I.521, R.524 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:G.393, C:T.418, C:W.420, C:Q.421, C:T.422, C:T.422, C:T.422, C:D.509, C:R.524 pi-Stacking: C:Y.419, C:Y.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jogl, G. et al., Crystal structure of yeast acetyl-coenzyme A synthetase in complex with AMP. Biochemistry (2004)

Release Date

2004-03-09

Peptides

acetyl-coenzyme A synthetase 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

acetyl-coenzyme A synthetase 1