SMTL ID : 1ryt.2 (1 other biounit)

RUBRERYTHRIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

12 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: E.52, E.93, E.127, H.130 Ligands: FE.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.52, A:E.93, A:E.127, A:H.130, H2O.48 FE.2: 5 residues within 4Å: Chain A: E.19, E.52, E.96, E.127 Ligands: FE.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.19, A:E.52, A:E.96, A:E.127, H2O.48 FE.3: 4 residues within 4Å: Chain A: C.157, C.160, C.173, C.176 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.157, A:C.160, A:C.173, A:C.176 FE.4: 5 residues within 4Å: Chain B: E.52, E.93, E.127, H.130 Ligands: FE.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.52, B:E.93, B:E.127, B:H.130, H2O.99 FE.5: 5 residues within 4Å: Chain B: E.19, E.52, E.96, E.127 Ligands: FE.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.19, B:E.52, B:E.96, B:E.127, H2O.99 FE.6: 4 residues within 4Å: Chain B: C.157, C.160, C.173, C.176 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.157, B:C.160, B:C.173, B:C.176 FE.7: 5 residues within 4Å: Chain C: E.52, E.93, E.127, H.130 Ligands: FE.8 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.52, C:E.93, C:E.127, C:H.130, H2O.150 FE.8: 5 residues within 4Å: Chain C: E.19, E.52, E.96, E.127 Ligands: FE.7 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.19, C:E.52, C:E.96, C:E.127, H2O.150 FE.9: 4 residues within 4Å: Chain C: C.157, C.160, C.173, C.176 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.157, C:C.160, C:C.173, C:C.176 FE.10: 5 residues within 4Å: Chain D: E.52, E.93, E.127, H.130 Ligands: FE.11 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.52, D:E.93, D:E.127, D:H.130, H2O.201 FE.11: 5 residues within 4Å: Chain D: E.19, E.52, E.96, E.127 Ligands: FE.10 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.19, D:E.52, D:E.96, D:E.127, H2O.201 FE.12: 4 residues within 4Å: Chain D: C.157, C.160, C.173, C.176 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.157, D:C.160, D:C.173, D:C.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

deMare, F. et al., The structure of Desulfovibrio vulgaris rubrerythrin reveals a unique combination of rubredoxin-like FeS4 and ferritin-like diiron domains. Nat.Struct.Biol. (1996)

Release Date

1997-05-15

Peptides

RUBRERYTHRIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

RUBRERYTHRIN

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