- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x CD: CADMIUM ION(Non-covalent)
- 4 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
PEP.4: 12 residues within 4Å:- Chain A: R.126, K.131, P.132, Q.182, G.184, A.185, R.186, K.207, R.237, H.272
- Ligands: CD.1, E4P.6
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:P.132
- Hydrogen bonds: A:A.185
- Water bridges: A:E.164, A:R.186, A:R.186, A:R.186
- Salt bridges: A:R.126, A:K.131, A:R.186, A:K.207, A:K.207, A:R.237, A:H.272, A:H.272
PEP.5: 12 residues within 4Å:- Chain B: R.126, K.131, P.132, E.164, Q.182, G.184, A.185, R.186, K.207, R.237, H.272
- Ligands: E4P.7
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:P.132
- Hydrogen bonds: B:A.185, B:R.186
- Water bridges: B:E.164, B:R.186
- Salt bridges: B:R.126, B:K.131, B:K.207, B:K.207, B:R.237, B:H.272, B:H.272
PEP.11: 12 residues within 4Å:- Chain C: R.126, K.131, P.132, Q.182, G.184, A.185, R.186, K.207, R.237, H.272
- Ligands: CD.8, E4P.13
13 PLIP interactions:13 interactions with chain C- Hydrophobic interactions: C:P.132
- Hydrogen bonds: C:A.185
- Water bridges: C:R.186, C:R.186, C:R.186
- Salt bridges: C:R.126, C:K.131, C:R.186, C:K.207, C:K.207, C:R.237, C:H.272, C:H.272
PEP.12: 12 residues within 4Å:- Chain D: R.126, K.131, P.132, E.164, Q.182, G.184, A.185, R.186, K.207, R.237, H.272
- Ligands: E4P.14
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:P.132
- Hydrogen bonds: D:A.185, D:R.186
- Water bridges: D:R.186
- Salt bridges: D:R.126, D:K.131, D:K.207, D:K.207, D:R.237, D:H.272, D:H.272
- 4 x E4P: ERYTHOSE-4-PHOSPHATE(Non-covalent)
E4P.6: 10 residues within 4Å:- Chain A: C.102, K.131, P.132, R.133, T.134, R.186, S.308, D.309
- Ligands: CD.1, PEP.4
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:T.134, A:T.134, A:S.308, A:S.308
- Water bridges: A:S.135, A:R.186, A:R.247
- Salt bridges: A:R.133
E4P.7: 11 residues within 4Å:- Chain B: C.102, K.131, P.132, R.133, T.134, R.186, R.247, S.308, D.309
- Ligands: CD.2, PEP.5
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:K.131, B:T.134, B:T.134, B:R.186, B:R.186, B:R.247, B:S.308, B:S.308
- Water bridges: B:S.135, B:S.138
- Salt bridges: B:R.133
E4P.13: 10 residues within 4Å:- Chain C: C.102, K.131, P.132, R.133, T.134, R.186, S.308, D.309
- Ligands: CD.8, PEP.11
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:T.134, C:T.134, C:S.308, C:S.308
- Water bridges: C:S.135, C:R.186, C:R.247
- Salt bridges: C:R.133
E4P.14: 11 residues within 4Å:- Chain D: C.102, K.131, P.132, R.133, T.134, R.186, R.247, S.308, D.309
- Ligands: CD.9, PEP.12
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:K.131, D:T.134, D:R.186, D:R.186, D:R.247, D:S.308, D:S.308
- Water bridges: D:S.135, D:S.138
- Salt bridges: D:R.133
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Crystal Structure of the Reaction Complex of 3-Deoxy-d-arabino-heptulosonate-7-phosphate Synthase from Thermotoga maritima Refines the Catalytic Mechanism and Indicates a New Mechanism of Allosteric Regulation. J.Mol.Biol. (2004)
- Release Date
- 2004-08-10
- Peptides
- Phospho-2-dehydro-3-deoxyheptonate aldolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x CD: CADMIUM ION(Non-covalent)
- 4 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
- 4 x E4P: ERYTHOSE-4-PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Crystal Structure of the Reaction Complex of 3-Deoxy-d-arabino-heptulosonate-7-phosphate Synthase from Thermotoga maritima Refines the Catalytic Mechanism and Indicates a New Mechanism of Allosteric Regulation. J.Mol.Biol. (2004)
- Release Date
- 2004-08-10
- Peptides
- Phospho-2-dehydro-3-deoxyheptonate aldolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B