SMTL ID : 1rzt.1 (3 other biounits)

Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x DG- DT- DG- DC- DG: 5'-D(*GP*TP*GP*CP*G)-3'(Non-covalent)

DG-DT-DG-DC-DG.1: 15 residues within 4Å: Chain A: A.6, C.7, G.8, C.9, A.10, C.11 Chain B: I.97, W.98, G.99, A.100, G.101, T.102, K.103, T.104 Ligands: NA.4 Protein-ligand interaction information (PLIP) not available

1 x DG- DC- DC- DG: 5'-D(P*GP*CP*CP*G)-3'(Non-covalent)

DG-DC-DC-DG.2: 16 residues within 4Å: Chain A: C.1, G.2, G.3, C.4 Chain B: Y.23, W.30, R.31, G.34, Y.35, P.59, G.60, I.61, G.62, R.64, M.65, K.68 Protein-ligand interaction information (PLIP) not available

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NA.4: 4 residues within 4Å: Chain B: S.95, I.97, A.100 Ligands: DG-DT-DG-DC-DG.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.95, B:A.100 NA.5: 2 residues within 4Å: Chain B: Y.23, Q.26 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Diaz, M. et al., A structural solution for the DNA polymerase lambda-dependent repair of DNA gaps with minimal homology. Mol.Cell (2004)

Release Date

2004-03-02

Peptides

DNA polymerase lambda: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

DNA polymerase lambda

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