SMTL ID : 1s0o.1 (1 other biounit)

Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain C: D.7, D.105, E.106 Ligands: CA.2, TTP.5 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.7, C:D.105, C:E.106, H2O.6, H2O.7 CA.2: 5 residues within 4Å: Chain C: D.7, F.8, D.105 Ligands: CA.1, TTP.5 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.7, C:F.8, C:D.105, H2O.2 CA.3: 2 residues within 4Å: Chain C: A.181, I.186 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:A.181, C:I.186

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 1 residues within 4Å: Chain C: D.294 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.294, C:D.294, H2O.5

1 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)

TTP.5: 18 residues within 4Å: Chain B: A.3, G.4 Chain C: D.7, F.8, D.9, Y.10, F.11, Y.12, A.44, T.45, Y.48, R.51, A.57, M.76, D.105, K.159 Ligands: CA.1, CA.2 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:Y.12, C:T.45, C:A.57 Hydrogen bonds: C:D.7, C:Y.10, C:F.11, C:Y.12 Water bridges: C:D.9, C:D.9, C:K.159 Salt bridges: C:R.51, C:R.51, C:K.159, C:K.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ling, H. et al., Snapshots of Replication through an Abasic Lesion; Structural Basis for Base Substitutions and Frameshifts. Mol.Cell (2004)

Release Date

2004-03-30

Peptides

DNA polymerase IV: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA polymerase IV

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