SMTL ID : 1s3s.1

Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-6-3-mer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: D.205, V.206, G.207, G.248, T.249, G.250, K.251, T.252, L.253, I.380, H.384, G.408, A.409, A.412 Chain E: R.359 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain E Hydrogen bonds: A:G.207, A:G.207, A:G.248, A:T.249, A:G.250, A:K.251, A:T.252, A:T.252, A:T.252, A:L.253, E:R.359 Water bridges: A:T.252 Salt bridges: A:K.251, E:R.359 ADP.2: 18 residues within 4Å: Chain B: D.205, V.206, G.207, P.246, P.247, G.248, T.249, G.250, K.251, T.252, L.253, I.380, I.383, H.384, G.408, A.409, A.412 Chain F: R.359 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain F Hydrogen bonds: B:G.207, B:P.246, B:G.248, B:T.249, B:T.249, B:G.250, B:K.251, B:T.252, B:T.252, B:T.252, B:L.253 Water bridges: B:G.408 Salt bridges: B:K.251, F:R.359 ADP.3: 15 residues within 4Å: Chain C: D.205, V.206, G.207, P.247, G.248, T.249, G.250, K.251, T.252, L.253, I.380, H.384, G.408, A.409 Chain D: R.359 12 PLIP interactions: 10 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:G.207, C:G.207, C:G.248, C:G.250, C:K.251, C:T.252, C:T.252, C:T.252, C:L.253 Salt bridges: C:K.251, D:R.359, D:R.359 ADP.4: 15 residues within 4Å: Chain D: D.205, V.206, G.207, P.247, G.248, T.249, G.250, K.251, T.252, L.253, I.380, H.384, G.408, A.409, A.412 12 PLIP interactions: 11 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:G.207, D:G.207, D:G.248, D:T.249, D:G.250, D:K.251, D:T.252, D:T.252, D:T.252, D:L.253 Salt bridges: D:K.251, B:R.359 ADP.5: 16 residues within 4Å: Chain C: R.359 Chain E: D.205, V.206, G.207, C.209, G.248, T.249, G.250, K.251, T.252, L.253, I.380, H.384, G.408, A.409, A.412 13 PLIP interactions: 12 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:G.207, E:G.207, E:P.246, E:G.248, E:T.249, E:G.250, E:K.251, E:T.252, E:T.252, E:T.252, E:L.253 Salt bridges: E:K.251, C:R.359 ADP.6: 14 residues within 4Å: Chain F: D.205, V.206, G.207, P.247, G.248, T.249, G.250, K.251, T.252, L.253, I.380, H.384, G.408, A.409 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:G.207, F:G.248, F:T.249, F:T.249, F:G.250, F:K.251, F:T.252, F:T.252, F:T.252, F:L.253 Water bridges: F:T.252 Salt bridges: F:K.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dreveny, I. et al., Structural basis of the interaction between the AAA ATPase p97/VCP and its adaptor protein p47. Embo J. (2004)

Release Date

2004-03-30

Peptides

Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin containing protein) (VCP) [Contains: Valosin]: ABCDEF
p47 protein: GHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin containing protein) (VCP) [Contains: Valosin]

p47 protein

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