SMTL ID : 1s49.2 (1 other biounit)

Crystal Structure of RNA-dependent RNA polymerase construct 1 (residues 71-679) from bovine viral diarrhea virus complexed with GTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 10 residues within 4Å: Chain A: K.196, T.250, P.251, L.252, C.427, R.447, K.455, R.459, Y.511, L.607 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.196, A:P.251, A:L.252, A:Y.511 Salt bridges: A:R.447, A:K.455, A:R.459, A:R.459, A:R.459 GTP.2: 10 residues within 4Å: Chain B: K.196, T.250, P.251, L.252, C.427, R.447, K.455, R.459, Y.511, L.607 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:K.196, B:P.251, B:L.252, B:Y.511 Salt bridges: B:R.447, B:K.455, B:R.459, B:R.459, B:R.459

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, K.H. et al., The structure of the RNA-dependent RNA polymerase from bovine viral diarrhea virus establishes the role of GTP in de novo initiation. Proc.Natl.Acad.Sci.Usa (2004)

Release Date

2004-04-06

Peptides

RNA-dependent RNA polymerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

RNA-dependent RNA polymerase

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