SMTL ID : 1s5a.1

Crystal Structure of Putative Isomerase from Bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: Y.67, Y.107, Y.111, W.129, L.143 Ligands: GOL.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.129, A:L.143 Hydrogen bonds: A:Y.107 ACT.4: 6 residues within 4Å: Chain B: Y.67, Y.107, Y.111, W.129, L.143 Ligands: GOL.5 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.129, B:L.143 Hydrogen bonds: B:Y.107 Water bridges: B:Y.67, B:Y.67 ACT.6: 6 residues within 4Å: Chain C: Y.67, Y.107, Y.111, W.129, L.143 Ligands: GOL.7 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:L.143 Hydrogen bonds: C:Y.67, C:Y.107, C:Y.111, C:W.129 ACT.9: 6 residues within 4Å: Chain D: Y.67, Y.107, Y.111, W.129, V.134 Ligands: GOL.10 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:V.134 Hydrogen bonds: D:Y.67, D:Y.111

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: S.84, D.86, S.87 Chain B: R.17, M.20, F.76, T.77, A.78, P.79 Chain D: V.81, Y.82 6 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A, 1 interactions with chain D Water bridges: B:R.17, B:R.17, A:D.86 Hydrogen bonds: A:S.84, A:S.87, D:V.81 GOL.3: 7 residues within 4Å: Chain A: F.41, I.64, F.94, Y.111, D.127, W.129 Ligands: ACT.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.127 GOL.5: 9 residues within 4Å: Chain B: F.19, F.41, F.43, Y.63, I.64, Y.111, D.127, W.129 Ligands: ACT.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.63, B:Y.63, B:W.129 GOL.7: 8 residues within 4Å: Chain C: F.19, F.41, I.64, F.94, Y.111, D.127, W.129 Ligands: ACT.6 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.127 GOL.8: 5 residues within 4Å: Chain C: R.17, K.18, A.21, Y.22, E.25 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.17, C:R.17 GOL.10: 8 residues within 4Å: Chain D: F.41, F.43, Y.63, I.64, Y.67, D.127, W.129 Ligands: ACT.9 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Y.63 Water bridges: D:D.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., The Crystal Structure of APC1116 from Bacillus subtilis. TO BE PUBLISHED

Release Date

2004-05-11

Peptides

Hypothetical protein yesE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Hypothetical protein yesE