SMTL ID : 1s5u.2 (4 other biounits)

Crystal Structure of Hypothetical Protein EC709 from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: E.55, R.124, P.127, K.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.128 Salt bridges: A:R.124 SO4.3: 2 residues within 4Å: Chain B: R.88, G.89 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.89, B:T.90 Salt bridges: B:R.88 SO4.4: 4 residues within 4Å: Chain B: E.55, R.124, P.127, K.128 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.124, B:K.128 Water bridges: B:S.129 SO4.6: 2 residues within 4Å: Chain C: R.9, Q.81 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Q.81, C:N.103 Water bridges: C:R.9, C:N.103, C:N.103 Salt bridges: C:R.9 SO4.7: 3 residues within 4Å: Chain D: R.9, Q.81, N.103 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Q.81, D:N.103 Water bridges: D:N.103 Salt bridges: D:R.9 SO4.8: 4 residues within 4Å: Chain D: E.55, R.124, P.127, K.128 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:K.128 Water bridges: D:R.124, D:R.124, D:S.129 Salt bridges: D:R.124

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: R.13 Chain D: R.43, S.48 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:R.13, A:R.13, D:R.43 Water bridges: D:S.48 EDO.5: 3 residues within 4Å: Chain B: R.13 Chain C: R.43, S.48 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:R.43, B:R.13, B:R.13 EDO.9: 1 residues within 4Å: Chain D: R.56 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.56, D:R.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Hypothetical Protein EC709 from Escherichia coli. To be Published

Release Date

2004-05-11

Peptides

Protein ybgC: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Protein ybgC

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