SMTL ID : 1s5z.1

NDP kinase in complex with adenosine phosphonoacetic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

1 x SON: ADENOSINE PHOSPHONOACETIC ACID(Non-covalent)

SON.1: 10 residues within 4Å: Chain A: K.16, H.59, F.64, L.68, R.92, T.98, R.109, V.116, N.119 Chain F: E.155 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:K.16, A:R.109, A:R.109, A:V.116, A:N.119 Water bridges: A:K.16, A:R.92, A:H.122 Salt bridges: A:H.59 pi-Stacking: A:F.64, A:F.64

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain C: T.98, R.109 3 PLIP interactions: 3 interactions with chain C Water bridges: C:R.109, C:R.109 Salt bridges: C:R.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Adenosine phosphonoacetic acid is slowly metabolized by NDP kinase. Med.Chem. (2005)

Release Date

2005-02-01

Peptides

Nucleoside diphosphate kinase, cytosolic: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Nucleoside diphosphate kinase, cytosolic

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