SMTL ID : 1s8l.1

Anion-free form of the D85S mutant of bacteriorhodopsin from crystals grown in the presence of halide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x RET: RETINAL(Covalent)

RET.1: 17 residues within 4Å: Chain A: Y.83, W.86, T.89, T.90, L.93, M.118, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.83, A:W.86, A:T.90, A:L.93, A:M.145, A:W.182, A:W.182, A:Y.185, A:Y.185, A:Y.185, A:Y.185, A:P.186, A:W.189, A:A.215, A:K.216

8 x LI1: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL(Non-functional Binders)(Non-covalent)

LI1.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) LI1.3: 3 residues within 4Å: Chain A: I.191, V.199, I.203 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.191, A:V.199 LI1.4: 5 residues within 4Å: Chain A: T.24, A.44, T.47, L.48, A.51 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.24, A:T.47, A:A.51 LI1.5: 4 residues within 4Å: Chain A: I.52, T.55, M.56, F.88 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.52, A:F.88 LI1.6: 3 residues within 4Å: Chain A: F.54, T.55, S.59 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.54 LI1.7: 5 residues within 4Å: Chain A: T.5, I.11, A.14, L.15, A.18 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.11, A:A.14, A:L.15, A:A.18 LI1.8: 3 residues within 4Å: Chain A: L.146, F.153, V.179 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.153, A:F.153, A:V.179 LI1.9: 4 residues within 4Å: Chain A: W.80, L.87, L.123, L.127 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.87, A:L.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Facciotti, M.T. et al., Specificity of anion binding in the substrate pocket of bacteriorhodopsin. Biochemistry (2004)

Release Date

2004-06-08

Peptides

Bacteriorhodopsin precursor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Bacteriorhodopsin precursor

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