SMTL ID : 1s99.1

The structure and function of B. subtilis YkoF gene product: ligand free protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: F.15, S.16, L.17, S.48, T.49 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.15 Hydrogen bonds: A:L.17, A:T.49 ACT.3: 5 residues within 4Å: Chain B: F.15, S.16, L.17, S.48, T.49 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.15 Hydrogen bonds: B:L.17, B:T.49, B:T.49

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: A.33, T.35 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:A.33, A:T.35, H2O.1, H2O.1, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Devedjiev, Y. et al., The Structure and Ligand Binding Properties of the B.subtilis YkoF Gene Product, a Member of a Novel Family of Thiamin/HMP-binding Proteins. J.Mol.Biol. (2004)

Release Date

2004-10-05

Peptides

ykoF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ykoF

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