SMTL ID : 1sb7.1

Crystal structure of the E.coli pseudouridine synthase TruD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain B: L.145, N.148, A.345, G.346 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.148, B:G.346 Water bridges: B:N.148 Salt bridges: B:K.98

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: G.31, K.32, Q.34 Chain B: G.250, W.252, A.316, R.317 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Water bridges: A:R.166 Hydrogen bonds: B:W.252, B:R.317, B:R.317 GOL.3: 5 residues within 4Å: Chain A: Q.245, G.250, W.252, A.316, R.317 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.245, A:R.317 GOL.4: 6 residues within 4Å: Chain A: F.46, F.150, S.347, F.348, A.349, T.350 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.349, A:T.350 GOL.5: 5 residues within 4Å: Chain B: D.51, K.146, Q.325, Q.326, W.342 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.326, B:Q.326 GOL.6: 2 residues within 4Å: Chain B: S.328, W.329 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.329 GOL.7: 1 residues within 4Å: Chain B: W.332 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoang, C. et al., Crystal structure of the highly divergent pseudouridine synthase TruD reveals a circular permutation of a conserved fold. Rna (2004)

Release Date

2004-06-29

Peptides

tRNA pseudouridine synthase D: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

tRNA pseudouridine synthase D