SMTL ID : 1sc6.1

Crystal Structure of W139G D-3-Phosphoglycerate dehydrogenase complexed with NAD+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 21 residues within 4Å: Chain A: P.99, F.100, S.101, N.102, T.103, G.152, Y.153, G.154, H.155, I.156, Y.174, D.175, I.176, K.179, H.204, V.205, P.206, S.210, T.211, M.214, R.234 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:N.102, A:T.103, A:T.103, A:Y.153, A:Y.153, A:H.155, A:I.156, A:I.176, A:K.179, A:V.205, A:N.208, A:S.210, A:S.210 Water bridges: A:G.154, A:G.157 Salt bridges: A:H.155, A:H.155 NAD.2: 22 residues within 4Å: Chain B: I.78, P.99, F.100, N.102, T.103, G.152, Y.153, G.154, H.155, I.156, Y.174, D.175, I.176, K.179, H.204, V.205, P.206, S.210, T.211, M.214, S.233, R.234 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:I.78, B:I.156 Hydrogen bonds: B:N.102, B:T.103, B:T.103, B:Y.153, B:Y.153, B:H.155, B:I.156, B:I.176, B:E.177, B:E.177, B:K.179, B:V.205, B:S.210, B:S.210 Water bridges: B:G.154, B:H.155, B:G.157, B:N.208 Salt bridges: B:H.155 NAD.3: 22 residues within 4Å: Chain C: P.99, F.100, S.101, N.102, T.103, I.151, G.152, Y.153, G.154, H.155, I.156, Y.174, D.175, I.176, K.179, H.204, V.205, P.206, E.207, S.210, T.211, M.214 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:I.156 Hydrogen bonds: C:N.102, C:T.103, C:Y.153, C:Y.153, C:H.155, C:H.155, C:I.156, C:I.176, C:K.179, C:K.179, C:V.205, C:E.207, C:S.210 Water bridges: C:G.154, C:G.157 Salt bridges: C:H.155 NAD.4: 21 residues within 4Å: Chain D: I.78, P.99, F.100, S.101, N.102, T.103, G.152, Y.153, G.154, H.155, I.156, Y.174, D.175, I.176, K.179, H.204, V.205, P.206, S.210, T.211, S.233 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:I.78 Hydrogen bonds: D:N.102, D:T.103, D:Y.153, D:Y.153, D:H.155, D:I.156, D:I.176, D:K.179, D:V.205, D:S.210, D:S.233 Water bridges: D:G.154, D:G.157, D:E.207 Salt bridges: D:H.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bell, J.K. et al., Multiconformational states in phosphoglycerate dehydrogenase. Biochemistry (2004)

Release Date

2005-02-22

Peptides

D-3-phosphoglycerate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

D-3-phosphoglycerate dehydrogenase