SMTL ID : 1sd1.1

STRUCTURE OF HUMAN 5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE COMPLEXED WITH FORMYCIN A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-trimer

Ligands

3 x FMC: (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol(Non-covalent)

FMC.1: 16 residues within 4Å: Chain A: T.18, H.61, A.94, C.95, G.96, I.172, F.177, I.194, N.195, M.196, T.219, D.220, D.222, V.231, V.236 Chain C: H.137 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.18, A:A.94, A:M.196, A:T.219, A:D.220, A:D.222, A:D.222 Water bridges: A:T.18, A:T.18, A:N.195, A:T.197 pi-Stacking: A:F.177 FMC.2: 16 residues within 4Å: Chain A: H.137 Chain B: T.18, H.61, A.94, C.95, G.96, I.172, F.177, I.194, N.195, M.196, T.219, D.220, D.222, V.231, V.236 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:T.18, B:A.94, B:M.196, B:T.219, B:D.220, B:D.222, B:D.222 Water bridges: B:T.18, B:T.18, B:N.195, B:T.197 pi-Stacking: B:F.177 FMC.3: 16 residues within 4Å: Chain B: H.137 Chain C: T.18, H.61, A.94, C.95, G.96, I.172, F.177, I.194, N.195, M.196, T.219, D.220, D.222, V.231, V.236 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:T.18, C:A.94, C:M.196, C:T.219, C:D.220, C:D.222, C:D.222 Water bridges: C:T.18, C:T.18, C:N.195, C:T.197 pi-Stacking: C:F.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J.E. et al., Structural Comparison of MTA Phosphorylase and MTA/AdoHcy Nucleosidase Explains Substrate Preferences and Identifies Regions Exploitable for Inhibitor Design. Biochemistry (2004)

Release Date

2004-05-18

Peptides

5'-methylthioadenosine phosphorylase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

5'-methylthioadenosine phosphorylase

Related Entries With Identical Sequence