SMTL ID : 1sdd.1

Crystal Structure of Bovine Factor Vai

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.197, Q.198 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.198 Hydrogen bonds: A:Q.198 NAG.2: 6 residues within 4Å: Chain A: M.203, Y.204, V.210, N.211, Q.289, A.290 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.204, A:N.211 NAG.4: 2 residues within 4Å: Chain B: P.125, N.126 No protein-ligand interaction detected (PLIP) NAG.5: 7 residues within 4Å: Chain B: P.144, G.145, S.146, R.175, W.248, N.275, E.296 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.248 Hydrogen bonds: B:S.146, B:R.175, B:N.275, B:E.296 NAG.6: 5 residues within 4Å: Chain B: N.184, M.185, P.186, N.433, D.456 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.433, B:N.433

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: K.93, A.98, E.108, D.111, D.112 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:K.93, A:E.108, A:D.111, A:D.111, A:D.112

1 x CU: COPPER (II) ION(Non-covalent)

CU.7: 4 residues within 4Å: Chain B: H.266, H.268, D.308, E.310 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.266, B:H.268, B:D.308, B:D.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adams, T.E. et al., The crystal structure of activated protein C-inactivated bovine factor Va: Implications for cofactor function. Proc.Natl.Acad.Sci.USA (2004)

Release Date

2004-06-29

Peptides

Coagulation factor V: A
Coagulation factor V: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor V

Coagulation factor V