SMTL ID : 1sde.1

Toward Better Antibiotics: Crystal Structure Of D-Ala-D-Ala Peptidase inhibited by a novel bicyclic phosphate inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x 2PB: 2-[(DIOXIDOPHOSPHINO)OXY]BENZOATE(Covalent)

2PB.1: 10 residues within 4Å: Chain A: G.61, S.62, Y.159, N.161, R.285, H.298, T.299, G.300, T.301, V.302 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.159 Hydrogen bonds: A:S.62, A:Y.159, A:T.299, A:T.301, A:T.301, A:V.302 Water bridges: A:N.161, A:T.301, A:T.301 Salt bridges: A:K.65, A:R.285, A:H.298

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: L.19, S.20 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.19 Water bridges: A:R.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silvaggi, N.R. et al., Toward better antibiotics: crystallographic studies of a novel class of DD-peptidase/beta-lactamase inhibitors. Biochemistry (2004)

Release Date

2004-10-12

Peptides

D-alanyl-D-alanine carboxypeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D-alanyl-D-alanine carboxypeptidase