SMTL ID : 1sdw.1

Reduced (Cu+) peptidylglycine alpha-hydroxylating monooxygenase with bound peptide and dioxygen

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.65, H.66, H.130 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.65, A:H.66, A:H.130 CU.2: 4 residues within 4Å: Chain A: H.200, H.202, M.272 Ligands: OXY.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.200, A:H.202

1 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 2 residues within 4Å: Chain A: H.193 Ligands: GOL.8 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.193, H2O.1, H2O.1

1 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.4: 5 residues within 4Å: Chain A: H.200, H.202, G.266, M.272 Ligands: CU.2 No protein-ligand interaction detected (PLIP)

3 x IYT: N-ALPHA-ACETYL-3,5-DIIODOTYROSYL-D-THREONINE(Non-covalent)

IYT.5: 14 residues within 4Å: Chain A: L.68, F.70, K.92, A.93, I.95, Q.128, L.164, M.166, R.198, H.200, M.272, N.274, Y.276 Ligands: GOL.13 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.68, A:L.164 Hydrogen bonds: A:A.93, A:A.93, A:N.274, A:N.274, A:Y.276, A:Y.276 Water bridges: A:Q.128 Salt bridges: A:R.198, A:H.200 IYT.6: 8 residues within 4Å: Chain A: L.15, D.19, A.21, K.56, R.58, S.148, V.149, H.150 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.15, A:L.15 Hydrogen bonds: A:D.19, A:R.58, A:S.148, A:S.148 Water bridges: A:R.107 Salt bridges: A:H.150 Halogen bonds: A:S.148 IYT.7: 9 residues within 4Å: Chain A: D.16, A.17, S.18, D.19, F.20, E.48, E.49, A.50, R.153 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.48, A:R.153 Hydrogen bonds: A:E.48, A:R.153 Halogen bonds: A:E.49

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 3 residues within 4Å: Chain A: H.193, D.240 Ligands: NI.3 No protein-ligand interaction detected (PLIP) GOL.9: 8 residues within 4Å: Chain A: F.55, L.96, Y.97, T.106, L.108, A.196, F.232, M.278 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.96 Water bridges: A:A.98, A:T.106, A:T.106, A:T.106 GOL.10: 9 residues within 4Å: Chain A: G.71, N.94, L.96, F.114, R.115, V.116, G.121, S.122, S.288 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.71, A:N.94, A:S.122 Water bridges: A:R.115, A:S.288 GOL.11: 8 residues within 4Å: Chain A: Y.163, C.185, Q.186, Y.187, K.188, M.189, M.290, T.291 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.186, A:K.188, A:T.291 GOL.12: 4 residues within 4Å: Chain A: T.106, P.109, F.195, P.234 No protein-ligand interaction detected (PLIP) GOL.13: 10 residues within 4Å: Chain A: A.93, N.94, I.95, M.162, L.164, Y.276, F.289, M.290, T.291 Ligands: IYT.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.95, A:M.290, A:T.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prigge, S.T. et al., Dioxygen binds end-on to mononuclear copper in a precatalytic enzyme complex. Science (2004)

Release Date

2004-05-11

Peptides

Peptidyl-glycine alpha-amidating monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-glycine alpha-amidating monooxygenase

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