SMTL ID : 1seq.1

Fab MNAC13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 8 residues within 4Å: Chain A: S.39, T.163, D.164, Q.165, D.166 Chain B: V.173, H.174, T.175 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:T.175, A:S.39, A:Q.165, A:D.166 Water bridges: B:V.173, A:D.164

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 5 residues within 4Å: Chain A: Y.31, W.90, S.91 Chain B: F.102, K.107 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:W.90, A:W.90, B:F.102, B:K.107, B:K.107 Hydrogen bonds: A:S.91

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: K.168 Chain B: S.171, G.172 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:K.168 Hydrogen bonds: B:G.172 Water bridges: B:V.173 SO4.4: 2 residues within 4Å: Chain A: E.122 Chain B: K.218 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Salt bridges: B:K.218 Hydrogen bonds: A:E.122 SO4.5: 6 residues within 4Å: Chain B: S.52, K.53, G.54, G.55, G.56, S.57 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.52, B:S.52, B:G.54, B:G.56, B:S.57 SO4.6: 1 residues within 4Å: Chain B: G.26 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.26 Water bridges: B:S.25, B:S.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Covaceuszach, S. et al., Neutralization of NGF-TrkA Receptor Interaction by the Novel Antagonistic anti-TrkA Monoclonal Antibody MNAC13: a Structural Insight. Proteins (2005)

Release Date

2005-03-01

Peptides

Monoclonal Antibody MNAC13: A
Monoclonal Antibody MNAC13: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Monoclonal Antibody MNAC13

Monoclonal Antibody MNAC13