- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 9 residues within 4Å:- Chain A: D.45, A.47, G.48, G.49, L.53, H.57
- Chain B: T.76, V.80, L.81
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.49, A:H.57
EDO.4: 6 residues within 4Å:- Chain A: Q.69, K.72, L.73, P.85
- Chain B: A.27, D.28
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.69, A:K.72, A:K.72
EDO.5: 9 residues within 4Å:- Chain A: G.164, H.165, V.166, Y.167
- Chain C: G.164, H.165, V.166, Y.167
- Ligands: EDO.20
9 PLIP interactions:5 interactions with chain C, 4 interactions with chain A- Hydrogen bonds: C:H.165, C:Y.167, C:Y.167, A:H.165, A:H.165, A:Y.167
- Water bridges: C:V.166, C:V.166, A:V.166
EDO.6: 1 residues within 4Å:- Chain A: Q.9
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.9
EDO.11: 9 residues within 4Å:- Chain A: T.76, V.80, L.81
- Chain B: D.45, A.47, G.48, G.49, L.53, H.57
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.49, B:H.57
EDO.12: 8 residues within 4Å:- Chain B: G.164, H.165, V.166, Y.167
- Chain D: G.164, H.165, V.166, Y.167
8 PLIP interactions:5 interactions with chain B, 3 interactions with chain D- Hydrogen bonds: B:H.165, B:H.165, B:Y.167, D:H.165, D:Y.167
- Water bridges: B:V.166, B:V.166, D:V.166
EDO.13: 4 residues within 4Å:- Chain B: I.22, H.23, P.24, R.381
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:H.23, B:R.381
EDO.18: 8 residues within 4Å:- Chain C: D.45, A.47, G.48, G.49, H.57
- Chain D: T.76, V.80, L.81
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.49, C:H.57
EDO.19: 6 residues within 4Å:- Chain C: Q.69, K.72, L.73, P.85
- Chain D: A.27, D.28
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.69, C:K.72
EDO.20: 6 residues within 4Å:- Chain A: A.147, M.162, P.163
- Chain C: Y.167, D.194
- Ligands: EDO.5
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain A- Hydrogen bonds: C:Y.167, C:Y.167, A:A.147, A:M.162
- Water bridges: A:R.168
EDO.25: 8 residues within 4Å:- Chain C: T.76, V.80, L.81
- Chain D: D.45, A.47, G.48, G.49, H.57
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:G.49, D:H.57
EDO.26: 7 residues within 4Å:- Chain C: A.27, D.28
- Chain D: Q.69, K.72, L.73, Y.83, P.85
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Q.69, D:K.72
- Water bridges: D:Q.69
EDO.27: 4 residues within 4Å:- Chain D: I.22, H.23, P.24, R.381
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:H.23, D:R.381
EDO.28: 7 residues within 4Å:- Chain C: P.275, N.301, I.303
- Chain D: F.274, P.275, N.301, I.303
No protein-ligand interaction detected (PLIP)- 4 x IK2: 4'-DEOXY-4'-ACETYLYAMINO-PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
IK2.7: 16 residues within 4Å:- Chain A: T.110, G.111, S.112, Y.138, H.139, G.140, R.141, E.206, E.211, D.239, V.241, Q.242, K.268
- Chain B: Q.79, G.296, T.297
19 PLIP interactions:16 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:Y.138, A:E.206, A:V.241
- Hydrogen bonds: A:T.110, A:G.111, A:S.112, A:Y.138, A:Q.242, A:K.268, A:K.268, B:G.296, B:T.297
- Water bridges: A:S.112, A:Y.138, A:R.141, A:E.206, A:E.211, B:Y.298
- Salt bridges: A:R.141
IK2.14: 16 residues within 4Å:- Chain A: Q.79, G.296, T.297
- Chain B: T.110, G.111, S.112, Y.138, H.139, G.140, R.141, E.206, E.211, D.239, V.241, Q.242, K.268
19 PLIP interactions:15 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:Y.138, B:E.206, B:V.241
- Hydrogen bonds: B:G.111, B:S.112, B:Y.138, B:K.268, B:K.268, A:Q.79, A:G.296, A:T.297
- Water bridges: B:T.110, B:T.110, B:S.112, B:Y.138, B:R.141, B:E.206, A:Y.298
- Salt bridges: B:R.141
IK2.21: 16 residues within 4Å:- Chain C: T.110, G.111, S.112, Y.138, H.139, G.140, R.141, E.206, E.211, D.239, V.241, Q.242, K.268
- Chain D: Q.79, G.296, T.297
19 PLIP interactions:5 interactions with chain D, 14 interactions with chain C- Hydrogen bonds: D:Q.79, D:G.296, D:T.297, D:T.297, C:T.110, C:G.111, C:S.112, C:E.211, C:K.268, C:K.268
- Water bridges: D:Y.298, C:S.112, C:Y.138, C:E.206, C:E.211
- Hydrophobic interactions: C:Y.138, C:E.206, C:V.241
- Salt bridges: C:R.141
IK2.29: 16 residues within 4Å:- Chain C: Q.79, G.296, T.297
- Chain D: T.110, G.111, S.112, Y.138, H.139, G.140, R.141, E.206, E.211, D.239, V.241, Q.242, K.268
20 PLIP interactions:15 interactions with chain D, 5 interactions with chain C- Hydrophobic interactions: D:Y.138, D:E.206, D:V.241
- Hydrogen bonds: D:G.111, D:S.112, D:E.211, D:K.268, D:K.268, C:Q.79, C:G.296, C:T.297, C:T.297
- Water bridges: D:T.110, D:T.110, D:S.112, D:Y.138, D:E.211, D:Q.242, C:Y.298
- Salt bridges: D:R.141
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Crystal structures of unbound and aminooxyacetate-bound Escherichia coli gamma-aminobutyrate aminotransferase. Biochemistry (2004)
- Release Date
- 2004-09-14
- Peptides
- 4-aminobutyrate aminotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x IK2: 4'-DEOXY-4'-ACETYLYAMINO-PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Crystal structures of unbound and aminooxyacetate-bound Escherichia coli gamma-aminobutyrate aminotransferase. Biochemistry (2004)
- Release Date
- 2004-09-14
- Peptides
- 4-aminobutyrate aminotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D