SMTL ID : 1sfk.2 (3 other biounits)

Core (C) protein from West Nile Virus, subtype Kunjin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-tetramer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain B: T.22 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.22 CA.4: 1 residues within 4Å: Chain C: T.22 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.22

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain B: R.10 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain C: R.10 Ligand excluded by PLIP

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 4 residues within 4Å: Chain A: A.11, L.15, F.31 Chain B: L.8 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.15, B:L.8 PG4.6: 5 residues within 4Å: Chain C: L.8, A.11, F.31 Chain D: F.32, I.37 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:F.32, D:I.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dokland, T. et al., West nile virus core protein; tetramer structure and ribbon formation. Structure (2004)

Release Date

2004-08-09

Peptides

Core protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Core protein

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