SMTL ID : 1sgf.1

CRYSTAL STRUCTURE OF 7S NGF: A COMPLEX OF NERVE GROWTH FACTOR WITH FOUR BINDING PROTEINS (SERINE PROTEINASES)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain B: N.62, Y.79 Chain C: N.78, F.88 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.79 NAG-NAG.2: 4 residues within 4Å: Chain F: N.78, S.80, L.81, F.88 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.81, S.83, D.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.83, A:D.94, A:D.94 NAG.5: 4 residues within 4Å: Chain D: N.81, S.83, L.84, D.94 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.83, D:D.94

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain A: E.61, H.68 Chain C: H.207, P.209, E.212 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A Metal complexes: C:H.207, C:E.212, C:E.212, A:E.61, A:H.68 ZN.6: 4 residues within 4Å: Chain D: D.62, H.68 Chain F: H.207, E.212 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain F Metal complexes: D:D.62, D:H.68, F:H.207, F:E.212, F:E.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bax, B. et al., Structure of mouse 7S NGF: a complex of nerve growth factor with four binding proteins. Structure (1997)

Release Date

1998-05-27

Peptides

NERVE GROWTH FACTOR: AD
NERVE GROWTH FACTOR: BE
NERVE GROWTH FACTOR: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
X

B
B

E
Y

C
G

F
Z

NERVE GROWTH FACTOR

NERVE GROWTH FACTOR

NERVE GROWTH FACTOR

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