SMTL ID : 1shw.1

EphB2 / EphrinA5 Complex Structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-NAG.1: 6 residues within 4Å: Chain A: Y.8, N.10, N.13, P.36, H.37, Y.38 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.8

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: H.22, D.24 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.22, A:D.24, A:D.24, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Himanen, J.P. et al., Repelling class discrimination: ephrin-A5 binds to and activates EphB2 receptor signaling. Nat.Neurosci. (2004)

Release Date

2004-05-18

Peptides

Ephrin-A5: A
Ephrin type-B receptor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ephrin-A5

Ephrin type-B receptor 2

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