SMTL ID : 1sj1.1

The 1.5 A Resolution Crystal Structure of [Fe3S4]-Ferredoxin from the hyperthermophilic Archaeon Pyrococcus furiosus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

4 x NCO: COBALT HEXAMMINE(III)(Non-covalent)

NCO.1: 5 residues within 4Å: Chain A: M.53, E.54, C.56, P.57, S.59 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.54, A:E.54, A:C.56, A:S.59, A:S.59 Water bridges: A:S.59, A:S.59 NCO.2: 1 residues within 4Å: Chain A: E.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.41 Water bridges: A:E.41, A:E.41 NCO.4: 5 residues within 4Å: Chain B: M.53, E.54, C.56, P.57, S.59 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.54, B:C.56, B:C.56, B:S.59 Water bridges: A:A.66 NCO.5: 1 residues within 4Å: Chain B: E.41 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.41, B:E.41, B:E.41 Water bridges: B:E.41

2 x F3S: FE3-S4 CLUSTER(Non-covalent)

F3S.3: 13 residues within 4Å: Chain A: V.6, C.11, I.12, G.13, D.14, A.15, I.16, C.17, A.33, C.56, V.58, A.60, I.61 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions, Metal complexes: A:C.11, A:C.17, A:C.56, H2O.3, H2O.3 F3S.6: 13 residues within 4Å: Chain B: V.6, C.11, I.12, G.13, D.14, A.15, I.16, C.17, A.33, C.56, V.58, A.60, I.61 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions, Metal complexes: B:C.11, B:C.17, B:C.56, H2O.3, H2O.3, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nielsen, M.S. et al., The 1.5 A Resolution Crystal Structure of [Fe3S4]-Ferredoxin from the Hyperthermophilic Archaeon Pyrococcus furiosus. Biochemistry (2004)

Release Date

2004-05-25

Peptides

Ferredoxin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ferredoxin

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