- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.1: 6 residues within 4Å:- Chain A: D.189, N.191, E.214, D.239, E.240
- Ligands: AME.2
5 PLIP interactions:3 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: A:D.189, A:E.214, A:D.239, AME.2, H2O.3
MG.3: 5 residues within 4Å:- Chain B: D.189, N.191, E.214, D.239
- Ligands: AME.4
5 PLIP interactions:3 interactions with chain B, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: B:D.189, B:E.214, B:D.239, AME.4, H2O.9
MG.5: 6 residues within 4Å:- Chain C: D.189, N.191, E.214, D.239, E.240
- Ligands: AME.6
5 PLIP interactions:3 interactions with chain C, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: C:D.189, C:E.214, C:D.239, AME.6, H2O.14
MG.7: 7 residues within 4Å:- Chain D: D.189, N.191, E.214, D.239, E.240, K.263
- Ligands: AME.8
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.189, D:E.214, D:D.239, H2O.19
MG.9: 6 residues within 4Å:- Chain E: D.189, N.191, E.214, D.239, E.240
- Ligands: AME.10
5 PLIP interactions:3 interactions with chain E, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: E:D.189, E:E.214, E:D.239, AME.10, H2O.23
MG.11: 5 residues within 4Å:- Chain F: D.189, N.191, E.214, D.239
- Ligands: AME.12
5 PLIP interactions:3 interactions with chain F, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: F:D.189, F:E.214, F:D.239, AME.12, H2O.29
MG.13: 6 residues within 4Å:- Chain G: D.189, N.191, E.214, D.239, E.240
- Ligands: AME.14
5 PLIP interactions:3 interactions with chain G, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: G:D.189, G:E.214, G:D.239, AME.14, H2O.34
MG.15: 7 residues within 4Å:- Chain H: D.189, N.191, E.214, D.239, E.240, K.263
- Ligands: AME.16
4 PLIP interactions:3 interactions with chain H, 1 Ligand-Water interactions- Metal complexes: H:D.189, H:E.214, H:D.239, H2O.39
- 8 x AME: N-ACETYLMETHIONINE(Non-covalent)
AME.2: 15 residues within 4Å:- Chain A: F.23, M.50, S.135, K.161, K.163, D.189, N.191, E.214, D.239, N.261, K.263, G.291, M.292, D.316
- Ligands: MG.1
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:S.135, A:K.161, A:K.163, A:K.163, A:N.191, A:N.261, A:D.316
- Salt bridges: A:K.161, A:K.163, A:K.263
AME.4: 17 residues within 4Å:- Chain B: F.19, F.23, M.50, S.135, K.161, K.163, D.189, N.191, E.214, D.239, N.261, K.263, G.291, M.292, I.293, D.316
- Ligands: MG.3
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:S.135, B:K.161, B:K.161, B:K.163, B:N.191, B:N.261, B:G.291, B:G.291
- Salt bridges: B:K.161, B:K.163, B:K.263
AME.6: 16 residues within 4Å:- Chain C: F.23, M.50, S.135, K.161, K.163, D.189, N.191, E.214, D.239, N.261, K.263, G.291, M.292, I.293, D.316
- Ligands: MG.5
13 PLIP interactions:13 interactions with chain C- Hydrogen bonds: C:S.135, C:K.161, C:K.163, C:K.163, C:N.191, C:D.239, C:N.261, C:D.316, C:D.316
- Water bridges: C:E.214
- Salt bridges: C:K.161, C:K.163, C:K.263
AME.8: 17 residues within 4Å:- Chain D: F.19, F.23, M.50, S.135, K.161, K.163, D.189, N.191, E.214, D.239, N.261, K.263, G.291, M.292, I.293, D.316
- Ligands: MG.7
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:F.19
- Hydrogen bonds: D:S.135, D:K.161, D:K.163, D:N.261
- Salt bridges: D:K.161, D:K.163, D:K.263
AME.10: 15 residues within 4Å:- Chain E: F.23, M.50, S.135, K.161, K.163, D.189, N.191, E.214, D.239, N.261, K.263, G.291, M.292, D.316
- Ligands: MG.9
12 PLIP interactions:12 interactions with chain E- Hydrogen bonds: E:S.135, E:K.161, E:K.163, E:K.163, E:D.189, E:N.191, E:N.261, E:D.316
- Water bridges: E:E.214
- Salt bridges: E:K.161, E:K.163, E:K.263
AME.12: 17 residues within 4Å:- Chain F: F.19, F.23, M.50, S.135, K.161, K.163, D.189, N.191, E.214, D.239, N.261, K.263, G.291, M.292, I.293, D.316
- Ligands: MG.11
13 PLIP interactions:13 interactions with chain F- Hydrogen bonds: F:S.135, F:K.161, F:K.161, F:K.163, F:N.191, F:D.239, F:N.261, F:G.291, F:G.291, F:D.316
- Salt bridges: F:K.161, F:K.163, F:K.263
AME.14: 16 residues within 4Å:- Chain G: F.23, M.50, S.135, K.161, K.163, D.189, N.191, E.214, D.239, N.261, K.263, G.291, M.292, I.293, D.316
- Ligands: MG.13
10 PLIP interactions:10 interactions with chain G- Hydrogen bonds: G:S.135, G:K.161, G:K.163, G:K.163, G:N.191, G:N.261, G:D.316
- Salt bridges: G:K.161, G:K.163, G:K.263
AME.16: 17 residues within 4Å:- Chain H: F.19, F.23, M.50, S.135, K.161, K.163, D.189, N.191, E.214, D.239, N.261, K.263, G.291, M.292, I.293, D.316
- Ligands: MG.15
11 PLIP interactions:11 interactions with chain H- Hydrophobic interactions: H:F.19
- Hydrogen bonds: H:S.135, H:K.161, H:K.163, H:D.189, H:D.239, H:N.261, H:D.316
- Salt bridges: H:K.161, H:K.163, H:K.263
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., Evolution of Enzymatic Activity in the Enolase Superfamily: Structural Studies of the Promiscuous o-Succinylbenzoate Synthase from Amycolatopsis. Biochemistry (2004)
- Release Date
- 2004-06-01
- Peptides
- N-acylamino acid racemase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x AME: N-ACETYLMETHIONINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., Evolution of Enzymatic Activity in the Enolase Superfamily: Structural Studies of the Promiscuous o-Succinylbenzoate Synthase from Amycolatopsis. Biochemistry (2004)
- Release Date
- 2004-06-01
- Peptides
- N-acylamino acid racemase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
D