- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 2 x NO3: NITRATE ION(Non-functional Binders)
- 3 x DUP: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE(Non-covalent)
DUP.6: 15 residues within 4Å:- Chain A: N.77, G.80, T.81, I.82, D.83, Y.86, E.89, I.90, K.91
- Chain B: R.140
- Chain C: R.64, S.65, G.66, Q.113
- Ligands: MG.2
18 PLIP interactions:3 interactions with chain B, 6 interactions with chain A, 9 interactions with chain C- Water bridges: B:R.140, B:R.140, C:L.67, C:R.110, C:R.110
- Salt bridges: B:R.140
- Hydrophobic interactions: A:Y.86
- Hydrogen bonds: A:N.77, A:D.83, A:Y.86, A:K.91, A:K.91, C:R.64, C:R.64, C:S.65, C:S.65, C:G.66, C:Q.113
DUP.7: 15 residues within 4Å:- Chain B: R.64, S.65, G.66, Q.113
- Chain C: N.77, G.80, T.81, I.82, D.83, Y.86, E.89, I.90, K.91
- Ligands: MG.3, NO3.5
14 PLIP interactions:7 interactions with chain C, 7 interactions with chain B- Hydrophobic interactions: C:Y.86
- Hydrogen bonds: C:N.77, C:D.83, C:D.83, C:Y.86, C:K.91, C:K.91, B:R.64, B:S.65, B:S.65, B:G.66, B:Q.113
- Water bridges: B:R.110, B:R.110
DUP.8: 18 residues within 4Å:- Chain A: R.64, S.65, G.66, Q.113
- Chain B: N.77, G.80, T.81, I.82, D.83, Y.86, E.89, I.90, K.91
- Chain C: R.140, G.143, G.144, H.145
- Ligands: MG.1
20 PLIP interactions:8 interactions with chain B, 9 interactions with chain A, 3 interactions with chain C- Hydrophobic interactions: B:I.82, B:Y.86
- Hydrogen bonds: B:N.77, B:T.81, B:D.83, B:D.83, B:K.91, B:K.91, A:R.64, A:S.65, A:S.65, A:G.66, A:Q.113, C:R.140, C:H.145
- Water bridges: A:L.67, A:R.110, A:R.110, A:Q.113
- Salt bridges: C:R.140
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.9: 12 residues within 4Å:- Chain A: S.74, I.75, V.76, L.97
- Chain B: S.74, I.75, V.76, L.97
- Chain C: S.74, I.75, V.76, L.97
11 PLIP interactions:4 interactions with chain C, 3 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: C:S.74, C:I.75, B:S.74, B:I.75, A:S.74, A:I.75
- Water bridges: C:S.74, C:S.78, B:S.78, A:S.74, A:I.75
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chan, S. et al., Crystal structure of the Mycobacterium tuberculosis dUTPase: insights into the catalytic mechanism. J.Mol.Biol. (2004)
- Release Date
- 2004-03-09
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 2 x NO3: NITRATE ION(Non-functional Binders)
- 3 x DUP: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE(Non-covalent)
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chan, S. et al., Crystal structure of the Mycobacterium tuberculosis dUTPase: insights into the catalytic mechanism. J.Mol.Biol. (2004)
- Release Date
- 2004-03-09
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C