SMTL ID : 1skm.1

HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain C: F.18, A.19, G.20, L.21, G.22, G.23, N.39, E.40, W.41, D.42, D.60, I.61, G.78, P.80, L.100, Y.285, N.304, S.305, V.306 20 PLIP interactions: 20 interactions with chain C Hydrogen bonds: C:F.18, C:L.21, C:G.22, C:G.23, C:W.41, C:D.60, C:I.61, C:Y.285 Water bridges: C:F.18, C:F.24, C:F.24, C:D.42, C:D.42, C:Y.254, C:N.304, C:N.304 pi-Stacking: C:F.18, C:F.18, C:W.41, C:W.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horton, J.R. et al., Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by HhaI methyltransferase. Nucleic Acids Res. (2004)

Release Date

2004-08-24

Peptides

Modification methylase HhaI: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

Modification methylase HhaI

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